Hb_000751_010

Information

Type -
Description -
Location Contig751: 8038-8954
Sequence    

Annotation

kegg
ID rcu:RCOM_0119190
description hypothetical protein
nr
ID XP_002531024.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SYF5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0119190 PE=4 SV=1
Gene Ontology
ID GO:0005515
description atp-dependent helicase nuclease subunit a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56845: 7860-8942
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000751_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_102129_040 0.024657581 - - PREDICTED: PTI1-like tyrosine-protein kinase 2 isoform X1 [Jatropha curcas]
3 Hb_102900_010 0.0375665654 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 isoform X2 [Jatropha curcas]
4 Hb_006586_060 0.0424753831 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
5 Hb_031862_190 0.0495182198 - - -
6 Hb_001329_060 0.0499902385 - - Polygalacturonase precursor, putative [Ricinus communis]
7 Hb_003411_070 0.0532694666 - - PREDICTED: protein NRT1/ PTR FAMILY 3.1 [Populus euphratica]
8 Hb_000735_190 0.0544997337 - - hypothetical protein POPTR_0006s19340g [Populus trichocarpa]
9 Hb_000160_260 0.059877905 - - nutrient reservoir, putative [Ricinus communis]
10 Hb_000436_110 0.0664240684 - - PREDICTED: uncharacterized protein LOC105141197 [Populus euphratica]
11 Hb_008165_010 0.069976782 - - PREDICTED: 36.4 kDa proline-rich protein [Solanum lycopersicum]
12 Hb_010737_030 0.0703412337 - - unnamed protein product [Vitis vinifera]
13 Hb_000167_150 0.0707768008 - - hypothetical protein POPTR_0008s03590g [Populus trichocarpa]
14 Hb_000136_120 0.0748569876 - - PREDICTED: probable strigolactone esterase D14 homolog [Jatropha curcas]
15 Hb_001946_070 0.078659532 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
16 Hb_000496_100 0.0853785313 - - PREDICTED: cytochrome P450 94A2-like [Jatropha curcas]
17 Hb_001221_550 0.087526221 - - Corticosteroid 11-beta-dehydrogenase, putative [Ricinus communis]
18 Hb_009293_030 0.088514993 - - PREDICTED: salicylate carboxymethyltransferase [Jatropha curcas]
19 Hb_025048_050 0.0895439854 - - PREDICTED: protein PHYTOCHROME KINASE SUBSTRATE 3 [Jatropha curcas]
20 Hb_018663_010 0.0910358821 transcription factor TF Family: C2C2-YABBY PREDICTED: axial regulator YABBY 5 [Jatropha curcas]

Gene co-expression network

sample Hb_000751_010 Hb_000751_010 Hb_102129_040 Hb_102129_040 Hb_000751_010--Hb_102129_040 Hb_102900_010 Hb_102900_010 Hb_000751_010--Hb_102900_010 Hb_006586_060 Hb_006586_060 Hb_000751_010--Hb_006586_060 Hb_031862_190 Hb_031862_190 Hb_000751_010--Hb_031862_190 Hb_001329_060 Hb_001329_060 Hb_000751_010--Hb_001329_060 Hb_003411_070 Hb_003411_070 Hb_000751_010--Hb_003411_070 Hb_102129_040--Hb_006586_060 Hb_102129_040--Hb_102900_010 Hb_102129_040--Hb_001329_060 Hb_000735_190 Hb_000735_190 Hb_102129_040--Hb_000735_190 Hb_000167_150 Hb_000167_150 Hb_102129_040--Hb_000167_150 Hb_008165_010 Hb_008165_010 Hb_102900_010--Hb_008165_010 Hb_010737_030 Hb_010737_030 Hb_102900_010--Hb_010737_030 Hb_000436_110 Hb_000436_110 Hb_102900_010--Hb_000436_110 Hb_018663_010 Hb_018663_010 Hb_102900_010--Hb_018663_010 Hb_006586_060--Hb_000735_190 Hb_006586_060--Hb_000167_150 Hb_000136_120 Hb_000136_120 Hb_006586_060--Hb_000136_120 Hb_001221_550 Hb_001221_550 Hb_006586_060--Hb_001221_550 Hb_031862_190--Hb_003411_070 Hb_031862_190--Hb_000735_190 Hb_031862_190--Hb_001329_060 Hb_009293_030 Hb_009293_030 Hb_031862_190--Hb_009293_030 Hb_031862_190--Hb_102129_040 Hb_001946_070 Hb_001946_070 Hb_001329_060--Hb_001946_070 Hb_025048_050 Hb_025048_050 Hb_001329_060--Hb_025048_050 Hb_001329_060--Hb_003411_070 Hb_001329_060--Hb_000167_150 Hb_003411_070--Hb_000735_190 Hb_003411_070--Hb_001946_070 Hb_003411_070--Hb_009293_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0252199 34.2983 5.93956 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 8.06789

CAGE analysis