Hb_031862_190

Information

Type -
Description -
Location Contig31862: 205051-213558
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33636: 208102-208562 , PASA_asmbl_33637: 208568-208827
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031862_190 0.0 - - -
2 Hb_003411_070 0.0413268443 - - PREDICTED: protein NRT1/ PTR FAMILY 3.1 [Populus euphratica]
3 Hb_000751_010 0.0495182198 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000735_190 0.0588616173 - - hypothetical protein POPTR_0006s19340g [Populus trichocarpa]
5 Hb_001329_060 0.0611836323 - - Polygalacturonase precursor, putative [Ricinus communis]
6 Hb_009293_030 0.0619658461 - - PREDICTED: salicylate carboxymethyltransferase [Jatropha curcas]
7 Hb_102129_040 0.0636461883 - - PREDICTED: PTI1-like tyrosine-protein kinase 2 isoform X1 [Jatropha curcas]
8 Hb_000160_260 0.0674324911 - - nutrient reservoir, putative [Ricinus communis]
9 Hb_000187_100 0.0692524075 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
10 Hb_102900_010 0.0729827606 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 isoform X2 [Jatropha curcas]
11 Hb_006586_060 0.0757288655 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
12 Hb_006649_100 0.0800260126 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
13 Hb_000436_110 0.0806853437 - - PREDICTED: uncharacterized protein LOC105141197 [Populus euphratica]
14 Hb_001946_070 0.0825194828 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
15 Hb_004223_120 0.0840815207 - - PREDICTED: protein SPA, chloroplastic [Jatropha curcas]
16 Hb_000167_150 0.0859535682 - - hypothetical protein POPTR_0008s03590g [Populus trichocarpa]
17 Hb_000136_120 0.0860475848 - - PREDICTED: probable strigolactone esterase D14 homolog [Jatropha curcas]
18 Hb_003702_010 0.0874820131 - - PREDICTED: phospholipase A1-II 1-like [Jatropha curcas]
19 Hb_025048_050 0.0900871536 - - PREDICTED: protein PHYTOCHROME KINASE SUBSTRATE 3 [Jatropha curcas]
20 Hb_000173_330 0.0906923353 - - PREDICTED: glutamine synthetase leaf isozyme, chloroplastic [Vitis vinifera]

Gene co-expression network

sample Hb_031862_190 Hb_031862_190 Hb_003411_070 Hb_003411_070 Hb_031862_190--Hb_003411_070 Hb_000751_010 Hb_000751_010 Hb_031862_190--Hb_000751_010 Hb_000735_190 Hb_000735_190 Hb_031862_190--Hb_000735_190 Hb_001329_060 Hb_001329_060 Hb_031862_190--Hb_001329_060 Hb_009293_030 Hb_009293_030 Hb_031862_190--Hb_009293_030 Hb_102129_040 Hb_102129_040 Hb_031862_190--Hb_102129_040 Hb_003411_070--Hb_001329_060 Hb_003411_070--Hb_000751_010 Hb_003411_070--Hb_000735_190 Hb_001946_070 Hb_001946_070 Hb_003411_070--Hb_001946_070 Hb_003411_070--Hb_009293_030 Hb_000751_010--Hb_102129_040 Hb_102900_010 Hb_102900_010 Hb_000751_010--Hb_102900_010 Hb_006586_060 Hb_006586_060 Hb_000751_010--Hb_006586_060 Hb_000751_010--Hb_001329_060 Hb_000160_260 Hb_000160_260 Hb_000735_190--Hb_000160_260 Hb_000735_190--Hb_006586_060 Hb_000735_190--Hb_102129_040 Hb_000735_190--Hb_000751_010 Hb_000167_150 Hb_000167_150 Hb_000735_190--Hb_000167_150 Hb_001329_060--Hb_001946_070 Hb_025048_050 Hb_025048_050 Hb_001329_060--Hb_025048_050 Hb_001329_060--Hb_000167_150 Hb_001329_060--Hb_102129_040 Hb_009846_010 Hb_009846_010 Hb_009293_030--Hb_009846_010 Hb_009293_030--Hb_001329_060 Hb_009293_030--Hb_001946_070 Hb_004223_120 Hb_004223_120 Hb_009293_030--Hb_004223_120 Hb_102129_040--Hb_006586_060 Hb_102129_040--Hb_102900_010 Hb_102129_040--Hb_000167_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.128161 31.4716 4.60849 0 0.018835
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0903115 7.5276

CAGE analysis