Hb_009846_010

Information

Type -
Description -
Location Contig9846: 25012-40550
Sequence    

Annotation

kegg
ID vvi:100252964
description uncharacterized LOC100252964
nr
ID XP_012084404.1
description PREDICTED: uncharacterized protein LOC105643801 [Jatropha curcas]
swissprot
ID P33083
description Auxin-induced protein 6B OS=Glycine max PE=2 SV=1
trembl
ID A0A061E6C6
description SAUR-like auxin-responsive protein family OS=Theobroma cacao GN=TCM_006746 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009846_010 0.0 - - PREDICTED: uncharacterized protein LOC105643801 [Jatropha curcas]
2 Hb_000362_080 0.0391005468 - - hypothetical protein EUTSA_v10027329mg, partial [Eutrema salsugineum]
3 Hb_009293_030 0.0647597508 - - PREDICTED: salicylate carboxymethyltransferase [Jatropha curcas]
4 Hb_009771_010 0.0707783185 - - PREDICTED: glycerol-3-phosphate 2-O-acyltransferase 6 [Populus euphratica]
5 Hb_089140_130 0.0718714068 - - hypothetical protein POPTR_0006s14510g [Populus trichocarpa]
6 Hb_002929_030 0.0719625137 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
7 Hb_001153_170 0.0740438556 - - PREDICTED: protein HOTHEAD [Populus euphratica]
8 Hb_006594_030 0.0754795148 - - -
9 Hb_011316_080 0.0755665801 - - Cucumisin precursor, putative [Ricinus communis]
10 Hb_000136_120 0.0765747697 - - PREDICTED: probable strigolactone esterase D14 homolog [Jatropha curcas]
11 Hb_000847_040 0.0769389821 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 9 [Jatropha curcas]
12 Hb_000167_150 0.077813298 - - hypothetical protein POPTR_0008s03590g [Populus trichocarpa]
13 Hb_001946_070 0.0783436899 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
14 Hb_025048_050 0.0785341537 - - PREDICTED: protein PHYTOCHROME KINASE SUBSTRATE 3 [Jatropha curcas]
15 Hb_000836_620 0.0818036958 - - PREDICTED: protochlorophyllide reductase, chloroplastic [Jatropha curcas]
16 Hb_002259_020 0.0861917632 - - PREDICTED: uncharacterized protein LOC105646333 [Jatropha curcas]
17 Hb_001546_140 0.0872690458 - - Auxin-binding protein ABP19a precursor, putative [Ricinus communis]
18 Hb_005357_210 0.0913161277 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein MERISTEM L1 [Jatropha curcas]
19 Hb_000243_360 0.0914568265 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 isoform X1 [Vitis vinifera]
20 Hb_000887_030 0.0920416577 - - serine carboxypeptidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_009846_010 Hb_009846_010 Hb_000362_080 Hb_000362_080 Hb_009846_010--Hb_000362_080 Hb_009293_030 Hb_009293_030 Hb_009846_010--Hb_009293_030 Hb_009771_010 Hb_009771_010 Hb_009846_010--Hb_009771_010 Hb_089140_130 Hb_089140_130 Hb_009846_010--Hb_089140_130 Hb_002929_030 Hb_002929_030 Hb_009846_010--Hb_002929_030 Hb_001153_170 Hb_001153_170 Hb_009846_010--Hb_001153_170 Hb_000362_080--Hb_009293_030 Hb_001374_050 Hb_001374_050 Hb_000362_080--Hb_001374_050 Hb_000362_080--Hb_002929_030 Hb_000836_620 Hb_000836_620 Hb_000362_080--Hb_000836_620 Hb_000362_080--Hb_009771_010 Hb_003411_070 Hb_003411_070 Hb_009293_030--Hb_003411_070 Hb_031862_190 Hb_031862_190 Hb_009293_030--Hb_031862_190 Hb_001329_060 Hb_001329_060 Hb_009293_030--Hb_001329_060 Hb_001946_070 Hb_001946_070 Hb_009293_030--Hb_001946_070 Hb_004223_120 Hb_004223_120 Hb_009293_030--Hb_004223_120 Hb_009771_010--Hb_001153_170 Hb_009771_010--Hb_089140_130 Hb_001546_140 Hb_001546_140 Hb_009771_010--Hb_001546_140 Hb_011316_080 Hb_011316_080 Hb_009771_010--Hb_011316_080 Hb_009771_010--Hb_002929_030 Hb_007617_030 Hb_007617_030 Hb_009771_010--Hb_007617_030 Hb_089140_130--Hb_001153_170 Hb_089140_130--Hb_011316_080 Hb_089140_130--Hb_001546_140 Hb_000847_040 Hb_000847_040 Hb_089140_130--Hb_000847_040 Hb_006594_030 Hb_006594_030 Hb_089140_130--Hb_006594_030 Hb_002929_030--Hb_001546_140 Hb_002929_030--Hb_001153_170 Hb_000635_240 Hb_000635_240 Hb_002929_030--Hb_000635_240 Hb_002929_030--Hb_007617_030 Hb_002929_030--Hb_089140_130 Hb_001153_170--Hb_011316_080 Hb_001153_170--Hb_001546_140 Hb_001153_170--Hb_006594_030 Hb_001153_170--Hb_007617_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.38897 0.219728 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0202423 0.582618

CAGE analysis