Hb_001374_050

Information

Type -
Description -
Location Contig1374: 98149-102644
Sequence    

Annotation

kegg
ID rcu:RCOM_0880610
description Xylem serine proteinase 1 precursor, putative (EC:3.4.21.25)
nr
ID XP_012075010.1
description PREDICTED: subtilisin-like protease SBT5.3 [Jatropha curcas]
swissprot
ID Q9ZSP5
description Subtilisin-like protease SBT5.3 OS=Arabidopsis thaliana GN=AIR3 PE=2 SV=1
trembl
ID B9SGA4
description Xylem serine proteinase 1, putative OS=Ricinus communis GN=RCOM_0880610 PE=4 SV=1
Gene Ontology
ID GO:0004252
description subtilisin-like protease

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10324: 98067-102063
cDNA
(Sanger)
(ID:Location)		 049_M23.ab1: 100673-101673

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001374_050 0.0 - - PREDICTED: subtilisin-like protease SBT5.3 [Jatropha curcas]
2 Hb_004553_050 0.0347123673 - - PREDICTED: probable inactive receptor kinase At5g10020 [Jatropha curcas]
3 Hb_005460_040 0.0530182411 - - PREDICTED: long chain acyl-CoA synthetase 2 [Jatropha curcas]
4 Hb_003750_110 0.0754700953 - - PREDICTED: aldose 1-epimerase-like [Jatropha curcas]
5 Hb_001300_190 0.0790333427 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000836_620 0.0866099781 - - PREDICTED: protochlorophyllide reductase, chloroplastic [Jatropha curcas]
7 Hb_001205_140 0.0892734655 - - PREDICTED: cytochrome P450 90B1 [Jatropha curcas]
8 Hb_000362_080 0.0894564929 - - hypothetical protein EUTSA_v10027329mg, partial [Eutrema salsugineum]
9 Hb_002042_090 0.0913182774 - - PREDICTED: root phototropism protein 3-like [Jatropha curcas]
10 Hb_031862_210 0.0932588215 - - hypothetical protein JCGZ_24955 [Jatropha curcas]
11 Hb_006267_040 0.0932813014 - - PREDICTED: ABC transporter G family member 32 isoform X1 [Jatropha curcas]
12 Hb_001789_220 0.0956308576 - - PREDICTED: BAHD acyltransferase DCR-like [Jatropha curcas]
13 Hb_002929_030 0.0959955596 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
14 Hb_001253_050 0.0966819653 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
15 Hb_145502_010 0.0969096762 transcription factor TF Family: MYB PREDICTED: transcription factor MYB82-like [Jatropha curcas]
16 Hb_007617_030 0.0992423383 - - hypothetical protein JCGZ_26801 [Jatropha curcas]
17 Hb_000887_030 0.0994538936 - - serine carboxypeptidase, putative [Ricinus communis]
18 Hb_147976_010 0.0994755641 - - -
19 Hb_000160_020 0.1023218178 - - PREDICTED: gamma-interferon-inducible lysosomal thiol reductase-like [Jatropha curcas]
20 Hb_000142_050 0.1033386599 - - PREDICTED: beta-glucosidase 18-like isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_001374_050 Hb_001374_050 Hb_004553_050 Hb_004553_050 Hb_001374_050--Hb_004553_050 Hb_005460_040 Hb_005460_040 Hb_001374_050--Hb_005460_040 Hb_003750_110 Hb_003750_110 Hb_001374_050--Hb_003750_110 Hb_001300_190 Hb_001300_190 Hb_001374_050--Hb_001300_190 Hb_000836_620 Hb_000836_620 Hb_001374_050--Hb_000836_620 Hb_001205_140 Hb_001205_140 Hb_001374_050--Hb_001205_140 Hb_004553_050--Hb_005460_040 Hb_004553_050--Hb_001300_190 Hb_001789_220 Hb_001789_220 Hb_004553_050--Hb_001789_220 Hb_001253_050 Hb_001253_050 Hb_004553_050--Hb_001253_050 Hb_004553_050--Hb_001205_140 Hb_002042_090 Hb_002042_090 Hb_005460_040--Hb_002042_090 Hb_005460_040--Hb_001300_190 Hb_005460_040--Hb_001789_220 Hb_001166_010 Hb_001166_010 Hb_005460_040--Hb_001166_010 Hb_003750_110--Hb_000836_620 Hb_003750_110--Hb_005460_040 Hb_000142_050 Hb_000142_050 Hb_003750_110--Hb_000142_050 Hb_000080_070 Hb_000080_070 Hb_003750_110--Hb_000080_070 Hb_003750_110--Hb_002042_090 Hb_000739_010 Hb_000739_010 Hb_001300_190--Hb_000739_010 Hb_001646_030 Hb_001646_030 Hb_001300_190--Hb_001646_030 Hb_002259_120 Hb_002259_120 Hb_001300_190--Hb_002259_120 Hb_012675_040 Hb_012675_040 Hb_001300_190--Hb_012675_040 Hb_012807_040 Hb_012807_040 Hb_001300_190--Hb_012807_040 Hb_002929_030 Hb_002929_030 Hb_000836_620--Hb_002929_030 Hb_001433_210 Hb_001433_210 Hb_000836_620--Hb_001433_210 Hb_000635_240 Hb_000635_240 Hb_000836_620--Hb_000635_240 Hb_000210_210 Hb_000210_210 Hb_000836_620--Hb_000210_210 Hb_000836_620--Hb_000142_050 Hb_001205_140--Hb_001789_220 Hb_006117_030 Hb_006117_030 Hb_001205_140--Hb_006117_030 Hb_145502_010 Hb_145502_010 Hb_001205_140--Hb_145502_010 Hb_000018_110 Hb_000018_110 Hb_001205_140--Hb_000018_110 Hb_003598_070 Hb_003598_070 Hb_001205_140--Hb_003598_070 Hb_147976_010 Hb_147976_010 Hb_001205_140--Hb_147976_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0152562 27.6936 8.2915 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.889063 17.1454

CAGE analysis