Hb_000080_070

Information

Type -
Description -
Location Contig80: 28193-32383
Sequence    

Annotation

kegg
ID pxb:103957721
description peptidyl-prolyl cis-trans isomerase FKBP16-3, chloroplastic-like
nr
ID XP_012065241.1
description PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP16-3, chloroplastic [Jatropha curcas]
swissprot
ID O22870
description Peptidyl-prolyl cis-trans isomerase FKBP16-3, chloroplastic OS=Arabidopsis thaliana GN=FKBP16-3 PE=1 SV=2
trembl
ID A0A067L672
description Peptidyl-prolyl cis-trans isomerase OS=Jatropha curcas GN=JCGZ_20927 PE=4 SV=1
Gene Ontology
ID GO:0009534
description peptidyl-prolyl cis-trans isomerase fkbp16- chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58725: 28195-32510
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000080_070 0.0 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP16-3, chloroplastic [Jatropha curcas]
2 Hb_003750_110 0.0782488348 - - PREDICTED: aldose 1-epimerase-like [Jatropha curcas]
3 Hb_001287_020 0.0785195389 - - SulA [Manihot esculenta]
4 Hb_000836_620 0.0836579358 - - PREDICTED: protochlorophyllide reductase, chloroplastic [Jatropha curcas]
5 Hb_001638_060 0.0862028404 - - PREDICTED: rho GTPase-activating protein 3-like isoform X1 [Populus euphratica]
6 Hb_000142_050 0.0877070049 - - PREDICTED: beta-glucosidase 18-like isoform X1 [Populus euphratica]
7 Hb_003683_170 0.0881157927 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000030_070 0.0884030011 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000210_210 0.0923683599 - - PREDICTED: uncharacterized protein LOC105635822 isoform X1 [Jatropha curcas]
10 Hb_000821_030 0.0942559236 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN-2 [Jatropha curcas]
11 Hb_000262_090 0.0979210449 - - Root phototropism protein, putative [Ricinus communis]
12 Hb_000268_060 0.0995880858 - - receptor protein kinase, putative [Ricinus communis]
13 Hb_000174_120 0.1003615859 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
14 Hb_002215_030 0.1045180192 - - PREDICTED: uncharacterized protein LOC105640840 isoform X1 [Jatropha curcas]
15 Hb_001233_050 0.1048872672 - - Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplast precursor, putative [Ricinus communis]
16 Hb_000414_040 0.1058820575 - - hypothetical protein POPTR_0009s13250g [Populus trichocarpa]
17 Hb_002245_050 0.1081616215 - - Oxygen-evolving enhancer protein 3-1, chloroplast precursor, putative [Ricinus communis]
18 Hb_002284_290 0.1081902926 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
19 Hb_000635_240 0.1085659336 - - chlorophyll a/b-binding protein type II precursor [Populus trichocarpa]
20 Hb_005797_020 0.1093054394 - - PREDICTED: BAG family molecular chaperone regulator 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000080_070 Hb_000080_070 Hb_003750_110 Hb_003750_110 Hb_000080_070--Hb_003750_110 Hb_001287_020 Hb_001287_020 Hb_000080_070--Hb_001287_020 Hb_000836_620 Hb_000836_620 Hb_000080_070--Hb_000836_620 Hb_001638_060 Hb_001638_060 Hb_000080_070--Hb_001638_060 Hb_000142_050 Hb_000142_050 Hb_000080_070--Hb_000142_050 Hb_003683_170 Hb_003683_170 Hb_000080_070--Hb_003683_170 Hb_003750_110--Hb_000836_620 Hb_005460_040 Hb_005460_040 Hb_003750_110--Hb_005460_040 Hb_001374_050 Hb_001374_050 Hb_003750_110--Hb_001374_050 Hb_003750_110--Hb_000142_050 Hb_002042_090 Hb_002042_090 Hb_003750_110--Hb_002042_090 Hb_001287_020--Hb_003683_170 Hb_000030_070 Hb_000030_070 Hb_001287_020--Hb_000030_070 Hb_005618_030 Hb_005618_030 Hb_001287_020--Hb_005618_030 Hb_001377_080 Hb_001377_080 Hb_001287_020--Hb_001377_080 Hb_000510_180 Hb_000510_180 Hb_001287_020--Hb_000510_180 Hb_002929_030 Hb_002929_030 Hb_000836_620--Hb_002929_030 Hb_001433_210 Hb_001433_210 Hb_000836_620--Hb_001433_210 Hb_000635_240 Hb_000635_240 Hb_000836_620--Hb_000635_240 Hb_000210_210 Hb_000210_210 Hb_000836_620--Hb_000210_210 Hb_000836_620--Hb_000142_050 Hb_004235_070 Hb_004235_070 Hb_001638_060--Hb_004235_070 Hb_015807_120 Hb_015807_120 Hb_001638_060--Hb_015807_120 Hb_006261_020 Hb_006261_020 Hb_001638_060--Hb_006261_020 Hb_001638_060--Hb_000210_210 Hb_000821_030 Hb_000821_030 Hb_001638_060--Hb_000821_030 Hb_001638_060--Hb_000030_070 Hb_000018_110 Hb_000018_110 Hb_000142_050--Hb_000018_110 Hb_145502_010 Hb_145502_010 Hb_000142_050--Hb_145502_010 Hb_002245_050 Hb_002245_050 Hb_000142_050--Hb_002245_050 Hb_009692_050 Hb_009692_050 Hb_000142_050--Hb_009692_050 Hb_000174_120 Hb_000174_120 Hb_000142_050--Hb_000174_120 Hb_000142_050--Hb_001433_210 Hb_003683_170--Hb_000030_070 Hb_003683_170--Hb_005618_030 Hb_003683_170--Hb_001377_080 Hb_006555_020 Hb_006555_020 Hb_003683_170--Hb_006555_020 Hb_003683_170--Hb_001638_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0577214 0.22316 48.3727 8.63708 0.284082 0.19705
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.132771 0.626394 0 0.63358 34.4114

CAGE analysis