Hb_004235_070

Information

Type -
Description -
Location Contig4235: 61099-62242
Sequence    

Annotation

kegg
ID rcu:RCOM_1504200
description acyl carrier protein, putative (EC:1.3.1.74)
nr
ID XP_002511107.1
description acyl carrier protein, putative [Ricinus communis]
swissprot
ID Q9SW21
description Acyl carrier protein 4, chloroplastic OS=Arabidopsis thaliana GN=ACP4 PE=2 SV=1
trembl
ID B9RA82
description Acyl carrier protein OS=Ricinus communis GN=RCOM_1504200 PE=3 SV=1
Gene Ontology
ID GO:0016491
description acyl carrier protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41872: 60114-60548 , PASA_asmbl_41873: 60965-62217
cDNA
(Sanger)
(ID:Location)		 006_I22.ab1: 61024-62215 , 011_J04.ab1: 61017-62095 , 015_I12.ab1: 60965-62088 , 017_H02.ab1: 60965-62132 , 019_A05.ab1: 60971-61966 , 020_A04.ab1: 60971-62117 , 024_N24.ab1: 61033-62139 , 027_A01.ab1: 60965-62128 , 037_D22.ab1: 60949-62029 , 043_G02.ab1: 61017-62091 , 046_A07.ab1: 60965-62128 , 047_L05.ab1: 61004-62176

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004235_070 0.0 - - acyl carrier protein, putative [Ricinus communis]
2 Hb_006261_020 0.0237939753 - - Vacuolar cation/proton exchanger 1a, putative [Ricinus communis]
3 Hb_000740_010 0.0374701337 - - cytochrome P450, putative [Ricinus communis]
4 Hb_015807_120 0.0388332494 - - PREDICTED: photosynthetic NDH subunit of lumenal location 3, chloroplastic [Jatropha curcas]
5 Hb_071557_010 0.0427633043 - - hypothetical protein POPTR_0008s06270g [Populus trichocarpa]
6 Hb_001638_060 0.0445913607 - - PREDICTED: rho GTPase-activating protein 3-like isoform X1 [Populus euphratica]
7 Hb_002006_080 0.0504716048 - - PREDICTED: CRAL-TRIO domain-containing protein YKL091C-like isoform X2 [Citrus sinensis]
8 Hb_048476_090 0.0514105094 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000210_210 0.0534189408 - - PREDICTED: uncharacterized protein LOC105635822 isoform X1 [Jatropha curcas]
10 Hb_099335_010 0.0546015099 - - PREDICTED: UDP-glycosyltransferase 76C2-like [Populus euphratica]
11 Hb_000979_210 0.0587436381 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003392_060 0.0595451713 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
13 Hb_096267_010 0.0640140631 - - hypothetical protein POPTR_0008s06270g [Populus trichocarpa]
14 Hb_002253_020 0.0647747816 - - PREDICTED: callose synthase 5 [Jatropha curcas]
15 Hb_000011_510 0.0661329705 - - Esterase precursor, putative [Ricinus communis]
16 Hb_002078_280 0.0676321998 - - chlorophyll a/b-binding protein type II precursor [Populus trichocarpa]
17 Hb_000414_040 0.0677253584 - - hypothetical protein POPTR_0009s13250g [Populus trichocarpa]
18 Hb_000847_040 0.072407272 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 9 [Jatropha curcas]
19 Hb_006555_020 0.0735632469 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 55-like [Jatropha curcas]
20 Hb_011433_010 0.0736639275 - - PREDICTED: (R)-mandelonitrile lyase-like [Populus euphratica]

Gene co-expression network

sample Hb_004235_070 Hb_004235_070 Hb_006261_020 Hb_006261_020 Hb_004235_070--Hb_006261_020 Hb_000740_010 Hb_000740_010 Hb_004235_070--Hb_000740_010 Hb_015807_120 Hb_015807_120 Hb_004235_070--Hb_015807_120 Hb_071557_010 Hb_071557_010 Hb_004235_070--Hb_071557_010 Hb_001638_060 Hb_001638_060 Hb_004235_070--Hb_001638_060 Hb_002006_080 Hb_002006_080 Hb_004235_070--Hb_002006_080 Hb_006261_020--Hb_000740_010 Hb_006261_020--Hb_001638_060 Hb_048476_090 Hb_048476_090 Hb_006261_020--Hb_048476_090 Hb_006261_020--Hb_015807_120 Hb_006261_020--Hb_071557_010 Hb_000740_010--Hb_071557_010 Hb_000740_010--Hb_048476_090 Hb_099335_010 Hb_099335_010 Hb_000740_010--Hb_099335_010 Hb_003392_060 Hb_003392_060 Hb_000740_010--Hb_003392_060 Hb_000740_010--Hb_015807_120 Hb_015807_120--Hb_003392_060 Hb_015807_120--Hb_071557_010 Hb_011433_010 Hb_011433_010 Hb_015807_120--Hb_011433_010 Hb_015807_120--Hb_001638_060 Hb_071557_010--Hb_003392_060 Hb_071557_010--Hb_099335_010 Hb_071557_010--Hb_048476_090 Hb_000011_510 Hb_000011_510 Hb_071557_010--Hb_000011_510 Hb_000210_210 Hb_000210_210 Hb_001638_060--Hb_000210_210 Hb_000821_030 Hb_000821_030 Hb_001638_060--Hb_000821_030 Hb_000030_070 Hb_000030_070 Hb_001638_060--Hb_000030_070 Hb_000847_040 Hb_000847_040 Hb_002006_080--Hb_000847_040 Hb_011316_080 Hb_011316_080 Hb_002006_080--Hb_011316_080 Hb_000979_210 Hb_000979_210 Hb_002006_080--Hb_000979_210 Hb_002006_080--Hb_000740_010 Hb_002006_080--Hb_071557_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.917051 245.017 25.2194 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.149339 0.058706 0 0 151.981

CAGE analysis