Hb_000030_070

Information

Type -
Description -
Location Contig30: 52865-56959
Sequence    

Annotation

kegg
ID rcu:RCOM_1121750
description hypothetical protein
nr
ID XP_002525437.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q94AQ8
description Photosynthetic NDH subunit of subcomplex B 2, chloroplastic OS=Arabidopsis thaliana GN=PNSB2 PE=2 SV=1
trembl
ID B9SHG8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1121750 PE=4 SV=1
Gene Ontology
ID GO:0003824
description ndh-dependent cyclic electron flow

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31484: 44535-52257 , PASA_asmbl_31486: 52986-53095 , PASA_asmbl_31487: 53121-54676 , PASA_asmbl_31489: 55113-56931
cDNA
(Sanger)
(ID:Location)		 021_D18.ab1: 56095-56931

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000030_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003683_170 0.0359398311 - - conserved hypothetical protein [Ricinus communis]
3 Hb_005618_030 0.0484210455 - - PREDICTED: cytochrome P450 734A1-like [Jatropha curcas]
4 Hb_001377_080 0.0561826447 - - PREDICTED: uncharacterized protein LOC105642864 [Jatropha curcas]
5 Hb_001638_060 0.0565900065 - - PREDICTED: rho GTPase-activating protein 3-like isoform X1 [Populus euphratica]
6 Hb_006555_020 0.0591845353 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 55-like [Jatropha curcas]
7 Hb_001287_020 0.0620345238 - - SulA [Manihot esculenta]
8 Hb_000821_030 0.0643755792 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN-2 [Jatropha curcas]
9 Hb_006261_020 0.0693582612 - - Vacuolar cation/proton exchanger 1a, putative [Ricinus communis]
10 Hb_003921_020 0.0703675633 - - hypothetical protein JCGZ_10628 [Jatropha curcas]
11 Hb_015807_120 0.0713372537 - - PREDICTED: photosynthetic NDH subunit of lumenal location 3, chloroplastic [Jatropha curcas]
12 Hb_008013_020 0.072059958 - - PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic [Jatropha curcas]
13 Hb_002078_280 0.072674677 - - chlorophyll a/b-binding protein type II precursor [Populus trichocarpa]
14 Hb_004235_070 0.0750523107 - - acyl carrier protein, putative [Ricinus communis]
15 Hb_000188_010 0.0759557802 - - PREDICTED: cytochrome P450 94C1-like [Jatropha curcas]
16 Hb_096267_010 0.0778734731 - - hypothetical protein POPTR_0008s06270g [Populus trichocarpa]
17 Hb_000262_090 0.0803694822 - - Root phototropism protein, putative [Ricinus communis]
18 Hb_001233_050 0.0827880713 - - Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplast precursor, putative [Ricinus communis]
19 Hb_000210_210 0.0839958816 - - PREDICTED: uncharacterized protein LOC105635822 isoform X1 [Jatropha curcas]
20 Hb_006573_110 0.084901494 - - PREDICTED: uncharacterized protein PAM68-like [Jatropha curcas]

Gene co-expression network

sample Hb_000030_070 Hb_000030_070 Hb_003683_170 Hb_003683_170 Hb_000030_070--Hb_003683_170 Hb_005618_030 Hb_005618_030 Hb_000030_070--Hb_005618_030 Hb_001377_080 Hb_001377_080 Hb_000030_070--Hb_001377_080 Hb_001638_060 Hb_001638_060 Hb_000030_070--Hb_001638_060 Hb_006555_020 Hb_006555_020 Hb_000030_070--Hb_006555_020 Hb_001287_020 Hb_001287_020 Hb_000030_070--Hb_001287_020 Hb_003683_170--Hb_001287_020 Hb_003683_170--Hb_005618_030 Hb_003683_170--Hb_001377_080 Hb_003683_170--Hb_006555_020 Hb_003683_170--Hb_001638_060 Hb_008013_020 Hb_008013_020 Hb_005618_030--Hb_008013_020 Hb_005618_030--Hb_006555_020 Hb_096267_010 Hb_096267_010 Hb_005618_030--Hb_096267_010 Hb_000937_010 Hb_000937_010 Hb_005618_030--Hb_000937_010 Hb_001377_080--Hb_006555_020 Hb_001377_080--Hb_005618_030 Hb_001377_080--Hb_096267_010 Hb_001377_080--Hb_001287_020 Hb_004235_070 Hb_004235_070 Hb_001638_060--Hb_004235_070 Hb_015807_120 Hb_015807_120 Hb_001638_060--Hb_015807_120 Hb_006261_020 Hb_006261_020 Hb_001638_060--Hb_006261_020 Hb_000210_210 Hb_000210_210 Hb_001638_060--Hb_000210_210 Hb_000821_030 Hb_000821_030 Hb_001638_060--Hb_000821_030 Hb_006555_020--Hb_096267_010 Hb_000011_510 Hb_000011_510 Hb_006555_020--Hb_000011_510 Hb_048476_090 Hb_048476_090 Hb_006555_020--Hb_048476_090 Hb_001287_020--Hb_005618_030 Hb_000080_070 Hb_000080_070 Hb_001287_020--Hb_000080_070 Hb_000510_180 Hb_000510_180 Hb_001287_020--Hb_000510_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.620147 41.6298 4.80203 0.0201409 0.0181975
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0945199 0.0743698 0 0.340395 31.3949

CAGE analysis