Hb_006555_020

Information

Type transcription factor
Description TF Family: NAC
Location Contig6555: 17507-19497
Sequence    

Annotation

kegg
ID rcu:RCOM_1298710
description NAC domain-containing protein, putative
nr
ID XP_012078844.1
description PREDICTED: NAC domain-containing protein 55-like [Jatropha curcas]
swissprot
ID Q9FIW5
description Putative NAC domain-containing protein 94 OS=Arabidopsis thaliana GN=ANAC094 PE=3 SV=1
trembl
ID R4N5L6
description NAC transcription factor 036 OS=Jatropha curcas PE=4 SV=1
Gene Ontology
ID GO:0005634
description nac domain-containing protein 72

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52683: 17381-19251 , PASA_asmbl_52684: 17655-19425
cDNA
(Sanger)
(ID:Location)		 016_E01.ab1: 18104-19251

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006555_020 0.0 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 55-like [Jatropha curcas]
2 Hb_096267_010 0.0459433744 - - hypothetical protein POPTR_0008s06270g [Populus trichocarpa]
3 Hb_000030_070 0.0591845353 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005618_030 0.0625253409 - - PREDICTED: cytochrome P450 734A1-like [Jatropha curcas]
5 Hb_001377_080 0.0629641315 - - PREDICTED: uncharacterized protein LOC105642864 [Jatropha curcas]
6 Hb_000011_510 0.0633831502 - - Esterase precursor, putative [Ricinus communis]
7 Hb_048476_090 0.0655780246 - - conserved hypothetical protein [Ricinus communis]
8 Hb_006261_020 0.0663843687 - - Vacuolar cation/proton exchanger 1a, putative [Ricinus communis]
9 Hb_099335_010 0.066706477 - - PREDICTED: UDP-glycosyltransferase 76C2-like [Populus euphratica]
10 Hb_001638_060 0.0716039573 - - PREDICTED: rho GTPase-activating protein 3-like isoform X1 [Populus euphratica]
11 Hb_003683_170 0.0717194995 - - conserved hypothetical protein [Ricinus communis]
12 Hb_015807_120 0.0725374575 - - PREDICTED: photosynthetic NDH subunit of lumenal location 3, chloroplastic [Jatropha curcas]
13 Hb_004724_440 0.0729062528 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004235_070 0.0735632469 - - acyl carrier protein, putative [Ricinus communis]
15 Hb_071557_010 0.0770064221 - - hypothetical protein POPTR_0008s06270g [Populus trichocarpa]
16 Hb_000740_010 0.0809472308 - - cytochrome P450, putative [Ricinus communis]
17 Hb_001284_050 0.0813671938 - - PREDICTED: uncharacterized protein LOC100781779 isoform X1 [Glycine max]
18 Hb_003392_060 0.0816666661 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
19 Hb_040323_010 0.0861467959 - - -
20 Hb_000188_010 0.0864295674 - - PREDICTED: cytochrome P450 94C1-like [Jatropha curcas]

Gene co-expression network

sample Hb_006555_020 Hb_006555_020 Hb_096267_010 Hb_096267_010 Hb_006555_020--Hb_096267_010 Hb_000030_070 Hb_000030_070 Hb_006555_020--Hb_000030_070 Hb_005618_030 Hb_005618_030 Hb_006555_020--Hb_005618_030 Hb_001377_080 Hb_001377_080 Hb_006555_020--Hb_001377_080 Hb_000011_510 Hb_000011_510 Hb_006555_020--Hb_000011_510 Hb_048476_090 Hb_048476_090 Hb_006555_020--Hb_048476_090 Hb_096267_010--Hb_000011_510 Hb_004724_440 Hb_004724_440 Hb_096267_010--Hb_004724_440 Hb_099335_010 Hb_099335_010 Hb_096267_010--Hb_099335_010 Hb_015807_120 Hb_015807_120 Hb_096267_010--Hb_015807_120 Hb_071557_010 Hb_071557_010 Hb_096267_010--Hb_071557_010 Hb_003683_170 Hb_003683_170 Hb_000030_070--Hb_003683_170 Hb_000030_070--Hb_005618_030 Hb_000030_070--Hb_001377_080 Hb_001638_060 Hb_001638_060 Hb_000030_070--Hb_001638_060 Hb_001287_020 Hb_001287_020 Hb_000030_070--Hb_001287_020 Hb_008013_020 Hb_008013_020 Hb_005618_030--Hb_008013_020 Hb_005618_030--Hb_003683_170 Hb_005618_030--Hb_096267_010 Hb_000937_010 Hb_000937_010 Hb_005618_030--Hb_000937_010 Hb_001377_080--Hb_003683_170 Hb_001377_080--Hb_005618_030 Hb_001377_080--Hb_096267_010 Hb_001377_080--Hb_001287_020 Hb_000011_510--Hb_099335_010 Hb_000011_510--Hb_048476_090 Hb_000011_510--Hb_071557_010 Hb_003392_060 Hb_003392_060 Hb_000011_510--Hb_003392_060 Hb_000740_010 Hb_000740_010 Hb_000011_510--Hb_000740_010 Hb_048476_090--Hb_099335_010 Hb_048476_090--Hb_000740_010 Hb_048476_090--Hb_071557_010 Hb_001284_050 Hb_001284_050 Hb_048476_090--Hb_001284_050 Hb_006261_020 Hb_006261_020 Hb_048476_090--Hb_006261_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.112387 14.7181 1.02428 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0303412 0 0.0728702 11.077

CAGE analysis