Hb_001284_050

Information

Type -
Description -
Location Contig1284: 88246-90046
Sequence    

Annotation

kegg
ID gmx:100781779
description uncharacterized LOC100781779
nr
ID XP_006596173.1
description PREDICTED: uncharacterized protein LOC100781779 isoform X1 [Glycine max]
swissprot
ID -
description -
trembl
ID A0A096SHT7
description Uncharacterized protein OS=Zea mays GN=LOC100382501 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08706: 88813-89185
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001284_050 0.0 - - PREDICTED: uncharacterized protein LOC100781779 isoform X1 [Glycine max]
2 Hb_048476_090 0.0438913828 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000334_020 0.0536754738 - - PREDICTED: dynein light chain 2, cytoplasmic [Jatropha curcas]
4 Hb_000016_140 0.0597758071 - - glucose-methanol-choline (gmc) oxidoreductase, putative [Ricinus communis]
5 Hb_099335_010 0.0610437004 - - PREDICTED: UDP-glycosyltransferase 76C2-like [Populus euphratica]
6 Hb_006261_020 0.06831944 - - Vacuolar cation/proton exchanger 1a, putative [Ricinus communis]
7 Hb_001033_080 0.0692521799 transcription factor TF Family: C2H2 Transcriptional regulator SUPERMAN, putative [Ricinus communis]
8 Hb_000740_010 0.0702200905 - - cytochrome P450, putative [Ricinus communis]
9 Hb_001085_280 0.0717983209 transcription factor TF Family: bHLH PREDICTED: transcription factor FAMA isoform X2 [Populus euphratica]
10 Hb_002253_020 0.0763351355 - - PREDICTED: callose synthase 5 [Jatropha curcas]
11 Hb_000011_510 0.0764012014 - - Esterase precursor, putative [Ricinus communis]
12 Hb_004235_070 0.077815595 - - acyl carrier protein, putative [Ricinus communis]
13 Hb_071557_010 0.0779245709 - - hypothetical protein POPTR_0008s06270g [Populus trichocarpa]
14 Hb_006555_020 0.0813671938 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 55-like [Jatropha curcas]
15 Hb_002006_080 0.0828918043 - - PREDICTED: CRAL-TRIO domain-containing protein YKL091C-like isoform X2 [Citrus sinensis]
16 Hb_000210_210 0.0875482778 - - PREDICTED: uncharacterized protein LOC105635822 isoform X1 [Jatropha curcas]
17 Hb_001638_060 0.0917805996 - - PREDICTED: rho GTPase-activating protein 3-like isoform X1 [Populus euphratica]
18 Hb_096267_010 0.0927939648 - - hypothetical protein POPTR_0008s06270g [Populus trichocarpa]
19 Hb_015807_120 0.0979575285 - - PREDICTED: photosynthetic NDH subunit of lumenal location 3, chloroplastic [Jatropha curcas]
20 Hb_003392_060 0.0997787346 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001284_050 Hb_001284_050 Hb_048476_090 Hb_048476_090 Hb_001284_050--Hb_048476_090 Hb_000334_020 Hb_000334_020 Hb_001284_050--Hb_000334_020 Hb_000016_140 Hb_000016_140 Hb_001284_050--Hb_000016_140 Hb_099335_010 Hb_099335_010 Hb_001284_050--Hb_099335_010 Hb_006261_020 Hb_006261_020 Hb_001284_050--Hb_006261_020 Hb_001033_080 Hb_001033_080 Hb_001284_050--Hb_001033_080 Hb_048476_090--Hb_099335_010 Hb_000740_010 Hb_000740_010 Hb_048476_090--Hb_000740_010 Hb_071557_010 Hb_071557_010 Hb_048476_090--Hb_071557_010 Hb_000011_510 Hb_000011_510 Hb_048476_090--Hb_000011_510 Hb_048476_090--Hb_006261_020 Hb_000334_020--Hb_000016_140 Hb_000334_020--Hb_001033_080 Hb_002253_020 Hb_002253_020 Hb_000334_020--Hb_002253_020 Hb_000334_020--Hb_048476_090 Hb_001085_280 Hb_001085_280 Hb_000334_020--Hb_001085_280 Hb_000016_140--Hb_001033_080 Hb_002701_100 Hb_002701_100 Hb_000016_140--Hb_002701_100 Hb_000016_140--Hb_001085_280 Hb_006355_100 Hb_006355_100 Hb_000016_140--Hb_006355_100 Hb_099335_010--Hb_000011_510 Hb_099335_010--Hb_071557_010 Hb_099335_010--Hb_000740_010 Hb_096267_010 Hb_096267_010 Hb_099335_010--Hb_096267_010 Hb_003392_060 Hb_003392_060 Hb_099335_010--Hb_003392_060 Hb_004235_070 Hb_004235_070 Hb_006261_020--Hb_004235_070 Hb_006261_020--Hb_000740_010 Hb_001638_060 Hb_001638_060 Hb_006261_020--Hb_001638_060 Hb_015807_120 Hb_015807_120 Hb_006261_020--Hb_015807_120 Hb_006261_020--Hb_071557_010 Hb_002028_070 Hb_002028_070 Hb_001033_080--Hb_002028_070 Hb_009189_090 Hb_009189_090 Hb_001033_080--Hb_009189_090 Hb_005357_210 Hb_005357_210 Hb_001033_080--Hb_005357_210 Hb_002006_080 Hb_002006_080 Hb_001033_080--Hb_002006_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 2.20539 0.124257 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0124075 1.22011

CAGE analysis