Hb_000334_020

Information

Type -
Description -
Location Contig334: 15280-16222
Sequence    

Annotation

kegg
ID rcu:RCOM_1254900
description cytoplasmic dynein light chain, putative
nr
ID XP_012070665.1
description PREDICTED: dynein light chain 2, cytoplasmic [Jatropha curcas]
swissprot
ID O02414
description Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina PE=3 SV=1
trembl
ID A0A067L371
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00707 PE=4 SV=1
Gene Ontology
ID GO:0005875
description dynein light chain cytoplasmic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35021: 15473-16106
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000334_020 0.0 - - PREDICTED: dynein light chain 2, cytoplasmic [Jatropha curcas]
2 Hb_000016_140 0.0215394892 - - glucose-methanol-choline (gmc) oxidoreductase, putative [Ricinus communis]
3 Hb_001033_080 0.0280822748 transcription factor TF Family: C2H2 Transcriptional regulator SUPERMAN, putative [Ricinus communis]
4 Hb_001284_050 0.0536754738 - - PREDICTED: uncharacterized protein LOC100781779 isoform X1 [Glycine max]
5 Hb_002253_020 0.0610772213 - - PREDICTED: callose synthase 5 [Jatropha curcas]
6 Hb_048476_090 0.0683168789 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001085_280 0.0684825286 transcription factor TF Family: bHLH PREDICTED: transcription factor FAMA isoform X2 [Populus euphratica]
8 Hb_006355_100 0.0717496353 - - hypothetical protein glysoja_002455 [Glycine soja]
9 Hb_002006_080 0.0748863114 - - PREDICTED: CRAL-TRIO domain-containing protein YKL091C-like isoform X2 [Citrus sinensis]
10 Hb_002701_100 0.0755112332 transcription factor TF Family: MIKC PREDICTED: truncated transcription factor CAULIFLOWER A-like [Jatropha curcas]
11 Hb_099335_010 0.0767331802 - - PREDICTED: UDP-glycosyltransferase 76C2-like [Populus euphratica]
12 Hb_000740_010 0.0785155827 - - cytochrome P450, putative [Ricinus communis]
13 Hb_002028_070 0.0801498062 - - PREDICTED: circadian locomoter output cycles protein kaput [Jatropha curcas]
14 Hb_006261_020 0.0806807175 - - Vacuolar cation/proton exchanger 1a, putative [Ricinus communis]
15 Hb_004235_070 0.0819983187 - - acyl carrier protein, putative [Ricinus communis]
16 Hb_009189_090 0.0823378661 - - protein phosphatase-2c, putative [Ricinus communis]
17 Hb_008032_010 0.0838771107 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
18 Hb_000847_040 0.084411681 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 9 [Jatropha curcas]
19 Hb_005357_210 0.0900160694 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein MERISTEM L1 [Jatropha curcas]
20 Hb_071557_010 0.0908047414 - - hypothetical protein POPTR_0008s06270g [Populus trichocarpa]

Gene co-expression network

sample Hb_000334_020 Hb_000334_020 Hb_000016_140 Hb_000016_140 Hb_000334_020--Hb_000016_140 Hb_001033_080 Hb_001033_080 Hb_000334_020--Hb_001033_080 Hb_001284_050 Hb_001284_050 Hb_000334_020--Hb_001284_050 Hb_002253_020 Hb_002253_020 Hb_000334_020--Hb_002253_020 Hb_048476_090 Hb_048476_090 Hb_000334_020--Hb_048476_090 Hb_001085_280 Hb_001085_280 Hb_000334_020--Hb_001085_280 Hb_000016_140--Hb_001033_080 Hb_000016_140--Hb_001284_050 Hb_002701_100 Hb_002701_100 Hb_000016_140--Hb_002701_100 Hb_000016_140--Hb_001085_280 Hb_006355_100 Hb_006355_100 Hb_000016_140--Hb_006355_100 Hb_002028_070 Hb_002028_070 Hb_001033_080--Hb_002028_070 Hb_009189_090 Hb_009189_090 Hb_001033_080--Hb_009189_090 Hb_005357_210 Hb_005357_210 Hb_001033_080--Hb_005357_210 Hb_002006_080 Hb_002006_080 Hb_001033_080--Hb_002006_080 Hb_001284_050--Hb_048476_090 Hb_099335_010 Hb_099335_010 Hb_001284_050--Hb_099335_010 Hb_006261_020 Hb_006261_020 Hb_001284_050--Hb_006261_020 Hb_001284_050--Hb_001033_080 Hb_030565_020 Hb_030565_020 Hb_002253_020--Hb_030565_020 Hb_011716_140 Hb_011716_140 Hb_002253_020--Hb_011716_140 Hb_002253_020--Hb_006261_020 Hb_004235_070 Hb_004235_070 Hb_002253_020--Hb_004235_070 Hb_002253_020--Hb_001033_080 Hb_048476_090--Hb_099335_010 Hb_000740_010 Hb_000740_010 Hb_048476_090--Hb_000740_010 Hb_071557_010 Hb_071557_010 Hb_048476_090--Hb_071557_010 Hb_000011_510 Hb_000011_510 Hb_048476_090--Hb_000011_510 Hb_048476_090--Hb_006261_020 Hb_001085_280--Hb_001284_050 Hb_001085_280--Hb_002701_100 Hb_001085_280--Hb_002253_020 Hb_001085_280--Hb_001033_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 56.0398 3.07689 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 26.1345

CAGE analysis