Hb_002701_100

Information

Type transcription factor
Description TF Family: MIKC
Location Contig2701: 84874-91277
Sequence    

Annotation

kegg
ID pop:POPTR_0017s13410g
description apetala1 family protein
nr
ID XP_012088065.1
description PREDICTED: truncated transcription factor CAULIFLOWER A-like [Jatropha curcas]
swissprot
ID Q42429
description Agamous-like MADS-box protein AGL8 homolog OS=Solanum tuberosum PE=2 SV=1
trembl
ID B5BUX3
description APETALA1/FRUITFUL like protein OS=Hydrangea macrophylla GN=HmFUL-1 PE=2 SV=1
Gene Ontology
ID GO:0005634
description truncated transcription factor cauliflower a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28324: 84904-90850
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002701_100 0.0 transcription factor TF Family: MIKC PREDICTED: truncated transcription factor CAULIFLOWER A-like [Jatropha curcas]
2 Hb_006355_100 0.0448418061 - - hypothetical protein glysoja_002455 [Glycine soja]
3 Hb_003729_050 0.0488730616 - - PREDICTED: vacuolar iron transporter 1-like isoform X1 [Jatropha curcas]
4 Hb_008032_010 0.0595595707 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
5 Hb_000016_140 0.0599376014 - - glucose-methanol-choline (gmc) oxidoreductase, putative [Ricinus communis]
6 Hb_132840_060 0.0721107576 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH57-like [Jatropha curcas]
7 Hb_000334_020 0.0755112332 - - PREDICTED: dynein light chain 2, cytoplasmic [Jatropha curcas]
8 Hb_001085_280 0.0776310568 transcription factor TF Family: bHLH PREDICTED: transcription factor FAMA isoform X2 [Populus euphratica]
9 Hb_009189_090 0.0805585392 - - protein phosphatase-2c, putative [Ricinus communis]
10 Hb_001033_080 0.0841558406 transcription factor TF Family: C2H2 Transcriptional regulator SUPERMAN, putative [Ricinus communis]
11 Hb_000023_170 0.0916971098 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2-like [Jatropha curcas]
12 Hb_155874_020 0.0976623136 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
13 Hb_099509_010 0.0978735039 - - PREDICTED: vacuolar iron transporter 1-like isoform X2 [Jatropha curcas]
14 Hb_009083_060 0.1026416974 - - PREDICTED: uncharacterized protein LOC103344557 [Prunus mume]
15 Hb_000037_210 0.102950864 - - -
16 Hb_000103_170 0.1032007811 - - uncharacterized protein LOC100501254 [Zea mays]
17 Hb_008195_100 0.1037220433 transcription factor TF Family: C2C2-YABBY PREDICTED: protein YABBY 4 [Vitis vinifera]
18 Hb_003428_020 0.1039356158 - - PREDICTED: uncharacterized protein LOC105140247 [Populus euphratica]
19 Hb_007676_090 0.1057171361 - - PREDICTED: uncharacterized protein LOC105644038 [Jatropha curcas]
20 Hb_006277_090 0.1061536958 - - PREDICTED: uncharacterized protein LOC105649700 [Jatropha curcas]

Gene co-expression network

sample Hb_002701_100 Hb_002701_100 Hb_006355_100 Hb_006355_100 Hb_002701_100--Hb_006355_100 Hb_003729_050 Hb_003729_050 Hb_002701_100--Hb_003729_050 Hb_008032_010 Hb_008032_010 Hb_002701_100--Hb_008032_010 Hb_000016_140 Hb_000016_140 Hb_002701_100--Hb_000016_140 Hb_132840_060 Hb_132840_060 Hb_002701_100--Hb_132840_060 Hb_000334_020 Hb_000334_020 Hb_002701_100--Hb_000334_020 Hb_006355_100--Hb_008032_010 Hb_006355_100--Hb_003729_050 Hb_006355_100--Hb_132840_060 Hb_009189_090 Hb_009189_090 Hb_006355_100--Hb_009189_090 Hb_000023_170 Hb_000023_170 Hb_006355_100--Hb_000023_170 Hb_003729_050--Hb_008032_010 Hb_003729_050--Hb_132840_060 Hb_155874_020 Hb_155874_020 Hb_003729_050--Hb_155874_020 Hb_003729_050--Hb_009189_090 Hb_008032_010--Hb_132840_060 Hb_008032_010--Hb_009189_090 Hb_008032_010--Hb_000023_170 Hb_008032_010--Hb_155874_020 Hb_000016_140--Hb_000334_020 Hb_001033_080 Hb_001033_080 Hb_000016_140--Hb_001033_080 Hb_001284_050 Hb_001284_050 Hb_000016_140--Hb_001284_050 Hb_001085_280 Hb_001085_280 Hb_000016_140--Hb_001085_280 Hb_000016_140--Hb_006355_100 Hb_132840_060--Hb_155874_020 Hb_132840_060--Hb_009189_090 Hb_132840_060--Hb_000023_170 Hb_000334_020--Hb_001033_080 Hb_000334_020--Hb_001284_050 Hb_002253_020 Hb_002253_020 Hb_000334_020--Hb_002253_020 Hb_048476_090 Hb_048476_090 Hb_000334_020--Hb_048476_090 Hb_000334_020--Hb_001085_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0390822 262.211 6.32659 0.0234999 0.0206446
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.10737 0.0422211 0 0 91.7607

CAGE analysis