Hb_000016_140

Information

Type -
Description -
Location Contig16: 179903-182292
Sequence    

Annotation

kegg
ID rcu:RCOM_1497790
description glucose-methanol-choline (gmc) oxidoreductase, putative (EC:4.1.2.10)
nr
ID XP_002510860.1
description glucose-methanol-choline (gmc) oxidoreductase, putative [Ricinus communis]
swissprot
ID Q9S746
description Protein HOTHEAD OS=Arabidopsis thaliana GN=HTH PE=1 SV=1
trembl
ID B9R9I5
description Glucose-methanol-choline (Gmc) oxidoreductase, putative OS=Ricinus communis GN=RCOM_1497790 PE=3 SV=1
Gene Ontology
ID GO:0016614
description protein hothead-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000016_140 0.0 - - glucose-methanol-choline (gmc) oxidoreductase, putative [Ricinus communis]
2 Hb_000334_020 0.0215394892 - - PREDICTED: dynein light chain 2, cytoplasmic [Jatropha curcas]
3 Hb_001033_080 0.0456917859 transcription factor TF Family: C2H2 Transcriptional regulator SUPERMAN, putative [Ricinus communis]
4 Hb_001284_050 0.0597758071 - - PREDICTED: uncharacterized protein LOC100781779 isoform X1 [Glycine max]
5 Hb_002701_100 0.0599376014 transcription factor TF Family: MIKC PREDICTED: truncated transcription factor CAULIFLOWER A-like [Jatropha curcas]
6 Hb_001085_280 0.060159266 transcription factor TF Family: bHLH PREDICTED: transcription factor FAMA isoform X2 [Populus euphratica]
7 Hb_006355_100 0.0667019586 - - hypothetical protein glysoja_002455 [Glycine soja]
8 Hb_002253_020 0.0698291095 - - PREDICTED: callose synthase 5 [Jatropha curcas]
9 Hb_048476_090 0.0806093686 - - conserved hypothetical protein [Ricinus communis]
10 Hb_008032_010 0.0816899472 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
11 Hb_009189_090 0.0871178102 - - protein phosphatase-2c, putative [Ricinus communis]
12 Hb_099335_010 0.0871489799 - - PREDICTED: UDP-glycosyltransferase 76C2-like [Populus euphratica]
13 Hb_003729_050 0.0878502483 - - PREDICTED: vacuolar iron transporter 1-like isoform X1 [Jatropha curcas]
14 Hb_000740_010 0.0954668168 - - cytochrome P450, putative [Ricinus communis]
15 Hb_006261_020 0.0955178867 - - Vacuolar cation/proton exchanger 1a, putative [Ricinus communis]
16 Hb_002028_070 0.0955467303 - - PREDICTED: circadian locomoter output cycles protein kaput [Jatropha curcas]
17 Hb_002006_080 0.0957349582 - - PREDICTED: CRAL-TRIO domain-containing protein YKL091C-like isoform X2 [Citrus sinensis]
18 Hb_004235_070 0.0984271519 - - acyl carrier protein, putative [Ricinus communis]
19 Hb_132840_060 0.0985948508 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH57-like [Jatropha curcas]
20 Hb_000023_170 0.1000496676 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000016_140 Hb_000016_140 Hb_000334_020 Hb_000334_020 Hb_000016_140--Hb_000334_020 Hb_001033_080 Hb_001033_080 Hb_000016_140--Hb_001033_080 Hb_001284_050 Hb_001284_050 Hb_000016_140--Hb_001284_050 Hb_002701_100 Hb_002701_100 Hb_000016_140--Hb_002701_100 Hb_001085_280 Hb_001085_280 Hb_000016_140--Hb_001085_280 Hb_006355_100 Hb_006355_100 Hb_000016_140--Hb_006355_100 Hb_000334_020--Hb_001033_080 Hb_000334_020--Hb_001284_050 Hb_002253_020 Hb_002253_020 Hb_000334_020--Hb_002253_020 Hb_048476_090 Hb_048476_090 Hb_000334_020--Hb_048476_090 Hb_000334_020--Hb_001085_280 Hb_002028_070 Hb_002028_070 Hb_001033_080--Hb_002028_070 Hb_009189_090 Hb_009189_090 Hb_001033_080--Hb_009189_090 Hb_005357_210 Hb_005357_210 Hb_001033_080--Hb_005357_210 Hb_002006_080 Hb_002006_080 Hb_001033_080--Hb_002006_080 Hb_001284_050--Hb_048476_090 Hb_099335_010 Hb_099335_010 Hb_001284_050--Hb_099335_010 Hb_006261_020 Hb_006261_020 Hb_001284_050--Hb_006261_020 Hb_001284_050--Hb_001033_080 Hb_002701_100--Hb_006355_100 Hb_003729_050 Hb_003729_050 Hb_002701_100--Hb_003729_050 Hb_008032_010 Hb_008032_010 Hb_002701_100--Hb_008032_010 Hb_132840_060 Hb_132840_060 Hb_002701_100--Hb_132840_060 Hb_002701_100--Hb_000334_020 Hb_001085_280--Hb_001284_050 Hb_001085_280--Hb_002701_100 Hb_001085_280--Hb_002253_020 Hb_001085_280--Hb_001033_080 Hb_006355_100--Hb_008032_010 Hb_006355_100--Hb_003729_050 Hb_006355_100--Hb_132840_060 Hb_006355_100--Hb_009189_090 Hb_000023_170 Hb_000023_170 Hb_006355_100--Hb_000023_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.855814 0.0351281 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.389221

CAGE analysis