Hb_009189_090

Information

Type -
Description -
Location Contig9189: 68084-70371
Sequence    

Annotation

kegg
ID rcu:RCOM_0849360
description protein phosphatase-2c, putative (EC:3.1.3.16)
nr
ID XP_002526696.1
description protein phosphatase-2c, putative [Ricinus communis]
swissprot
ID Q2RBJ6
description Probable protein phosphatase 2C 73 OS=Oryza sativa subsp. japonica GN=Os11g0109000 PE=2 SV=1
trembl
ID B9SL27
description Protein phosphatase-2c, putative OS=Ricinus communis GN=RCOM_0849360 PE=4 SV=1
Gene Ontology
ID GO:0004722
description probable protein phosphatase 2c 65

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009189_090 0.0 - - protein phosphatase-2c, putative [Ricinus communis]
2 Hb_000023_170 0.0131812298 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2-like [Jatropha curcas]
3 Hb_008032_010 0.0274563234 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
4 Hb_132840_060 0.0315167184 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH57-like [Jatropha curcas]
5 Hb_003702_010 0.0328961914 - - PREDICTED: phospholipase A1-II 1-like [Jatropha curcas]
6 Hb_006355_100 0.0384689378 - - hypothetical protein glysoja_002455 [Glycine soja]
7 Hb_005357_210 0.0454492921 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein MERISTEM L1 [Jatropha curcas]
8 Hb_155874_020 0.0458874705 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
9 Hb_003729_050 0.0527382691 - - PREDICTED: vacuolar iron transporter 1-like isoform X1 [Jatropha curcas]
10 Hb_008195_100 0.054695727 transcription factor TF Family: C2C2-YABBY PREDICTED: protein YABBY 4 [Vitis vinifera]
11 Hb_001033_080 0.0628655372 transcription factor TF Family: C2H2 Transcriptional regulator SUPERMAN, putative [Ricinus communis]
12 Hb_025048_050 0.0653756862 - - PREDICTED: protein PHYTOCHROME KINASE SUBSTRATE 3 [Jatropha curcas]
13 Hb_000853_340 0.070721286 - - PREDICTED: kynurenine--oxoglutarate transaminase 1-like isoform X2 [Populus euphratica]
14 Hb_000173_330 0.0711732947 - - PREDICTED: glutamine synthetase leaf isozyme, chloroplastic [Vitis vinifera]
15 Hb_001946_070 0.0764737031 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
16 Hb_002701_100 0.0805585392 transcription factor TF Family: MIKC PREDICTED: truncated transcription factor CAULIFLOWER A-like [Jatropha curcas]
17 Hb_001329_060 0.0819322643 - - Polygalacturonase precursor, putative [Ricinus communis]
18 Hb_000334_020 0.0823378661 - - PREDICTED: dynein light chain 2, cytoplasmic [Jatropha curcas]
19 Hb_005375_100 0.0832115285 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH57-like [Jatropha curcas]
20 Hb_002028_070 0.0834244245 - - PREDICTED: circadian locomoter output cycles protein kaput [Jatropha curcas]

Gene co-expression network

sample Hb_009189_090 Hb_009189_090 Hb_000023_170 Hb_000023_170 Hb_009189_090--Hb_000023_170 Hb_008032_010 Hb_008032_010 Hb_009189_090--Hb_008032_010 Hb_132840_060 Hb_132840_060 Hb_009189_090--Hb_132840_060 Hb_003702_010 Hb_003702_010 Hb_009189_090--Hb_003702_010 Hb_006355_100 Hb_006355_100 Hb_009189_090--Hb_006355_100 Hb_005357_210 Hb_005357_210 Hb_009189_090--Hb_005357_210 Hb_000023_170--Hb_003702_010 Hb_000023_170--Hb_132840_060 Hb_000023_170--Hb_008032_010 Hb_155874_020 Hb_155874_020 Hb_000023_170--Hb_155874_020 Hb_000023_170--Hb_005357_210 Hb_008032_010--Hb_006355_100 Hb_008032_010--Hb_132840_060 Hb_003729_050 Hb_003729_050 Hb_008032_010--Hb_003729_050 Hb_008032_010--Hb_155874_020 Hb_132840_060--Hb_155874_020 Hb_132840_060--Hb_003729_050 Hb_132840_060--Hb_006355_100 Hb_003702_010--Hb_155874_020 Hb_003702_010--Hb_132840_060 Hb_003702_010--Hb_005357_210 Hb_000853_340 Hb_000853_340 Hb_003702_010--Hb_000853_340 Hb_006355_100--Hb_003729_050 Hb_002701_100 Hb_002701_100 Hb_006355_100--Hb_002701_100 Hb_006355_100--Hb_000023_170 Hb_025048_050 Hb_025048_050 Hb_005357_210--Hb_025048_050 Hb_001946_070 Hb_001946_070 Hb_005357_210--Hb_001946_070 Hb_001329_060 Hb_001329_060 Hb_005357_210--Hb_001329_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.192496 0.0127731 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0588366

CAGE analysis