Hb_132840_060

Information

Type transcription factor
Description TF Family: bHLH
Location Contig132840: 43108-45448
Sequence    

Annotation

kegg
ID rcu:RCOM_1339970
description DNA binding protein, putative
nr
ID XP_012083091.1
description PREDICTED: transcription factor bHLH57-like [Jatropha curcas]
swissprot
ID Q700E4
description Transcription factor bHLH67 OS=Arabidopsis thaliana GN=BHLH67 PE=2 SV=1
trembl
ID B9RNL4
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_1339970 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor bhlh57 -like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09353: 43949-45623
cDNA
(Sanger)
(ID:Location)		 043_C19.ab1: 44826-45533

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_132840_060 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH57-like [Jatropha curcas]
2 Hb_008032_010 0.0180420045 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
3 Hb_155874_020 0.0279112355 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
4 Hb_003729_050 0.0306955555 - - PREDICTED: vacuolar iron transporter 1-like isoform X1 [Jatropha curcas]
5 Hb_009189_090 0.0315167184 - - protein phosphatase-2c, putative [Ricinus communis]
6 Hb_000023_170 0.033524199 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2-like [Jatropha curcas]
7 Hb_006355_100 0.033893015 - - hypothetical protein glysoja_002455 [Glycine soja]
8 Hb_003702_010 0.0435332435 - - PREDICTED: phospholipase A1-II 1-like [Jatropha curcas]
9 Hb_008195_100 0.0492055513 transcription factor TF Family: C2C2-YABBY PREDICTED: protein YABBY 4 [Vitis vinifera]
10 Hb_000853_340 0.0614772583 - - PREDICTED: kynurenine--oxoglutarate transaminase 1-like isoform X2 [Populus euphratica]
11 Hb_002701_100 0.0721107576 transcription factor TF Family: MIKC PREDICTED: truncated transcription factor CAULIFLOWER A-like [Jatropha curcas]
12 Hb_000173_330 0.0731226123 - - PREDICTED: glutamine synthetase leaf isozyme, chloroplastic [Vitis vinifera]
13 Hb_005357_210 0.0744660311 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein MERISTEM L1 [Jatropha curcas]
14 Hb_017358_060 0.0755795147 - - PREDICTED: uncharacterized protein LOC105641510 [Jatropha curcas]
15 Hb_005375_100 0.0782342369 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH57-like [Jatropha curcas]
16 Hb_001033_080 0.0869563434 transcription factor TF Family: C2H2 Transcriptional regulator SUPERMAN, putative [Ricinus communis]
17 Hb_019762_030 0.0910421295 - - hypothetical protein POPTR_0002s08720g [Populus trichocarpa]
18 Hb_063584_010 0.0934503248 - - hypothetical protein JCGZ_10530 [Jatropha curcas]
19 Hb_025048_050 0.0946878558 - - PREDICTED: protein PHYTOCHROME KINASE SUBSTRATE 3 [Jatropha curcas]
20 Hb_001401_050 0.0984483195 - - PREDICTED: chlorophyll a-b binding protein P4, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_132840_060 Hb_132840_060 Hb_008032_010 Hb_008032_010 Hb_132840_060--Hb_008032_010 Hb_155874_020 Hb_155874_020 Hb_132840_060--Hb_155874_020 Hb_003729_050 Hb_003729_050 Hb_132840_060--Hb_003729_050 Hb_009189_090 Hb_009189_090 Hb_132840_060--Hb_009189_090 Hb_000023_170 Hb_000023_170 Hb_132840_060--Hb_000023_170 Hb_006355_100 Hb_006355_100 Hb_132840_060--Hb_006355_100 Hb_008032_010--Hb_006355_100 Hb_008032_010--Hb_003729_050 Hb_008032_010--Hb_009189_090 Hb_008032_010--Hb_000023_170 Hb_008032_010--Hb_155874_020 Hb_000853_340 Hb_000853_340 Hb_155874_020--Hb_000853_340 Hb_003702_010 Hb_003702_010 Hb_155874_020--Hb_003702_010 Hb_155874_020--Hb_000023_170 Hb_008195_100 Hb_008195_100 Hb_155874_020--Hb_008195_100 Hb_003729_050--Hb_006355_100 Hb_002701_100 Hb_002701_100 Hb_003729_050--Hb_002701_100 Hb_003729_050--Hb_155874_020 Hb_003729_050--Hb_009189_090 Hb_009189_090--Hb_000023_170 Hb_009189_090--Hb_003702_010 Hb_009189_090--Hb_006355_100 Hb_005357_210 Hb_005357_210 Hb_009189_090--Hb_005357_210 Hb_000023_170--Hb_003702_010 Hb_000023_170--Hb_005357_210 Hb_006355_100--Hb_002701_100 Hb_006355_100--Hb_000023_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00961752 83.2753 4.15619 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 22.4792

CAGE analysis