Hb_008195_100

Information

Type transcription factor
Description TF Family: C2C2-YABBY
Location Contig8195: 105690-108197
Sequence    

Annotation

kegg
ID vvi:100267708
description protein YABBY 4
nr
ID XP_002266233.1
description PREDICTED: protein YABBY 4 [Vitis vinifera]
swissprot
ID O22152
description Axial regulator YABBY 1 OS=Arabidopsis thaliana GN=YAB1 PE=1 SV=1
trembl
ID D7TN10
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0154g00070 PE=4 SV=1
Gene Ontology
ID GO:0003700
description protein yabby 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008195_100 0.0 transcription factor TF Family: C2C2-YABBY PREDICTED: protein YABBY 4 [Vitis vinifera]
2 Hb_155874_020 0.0415915712 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
3 Hb_003702_010 0.048150825 - - PREDICTED: phospholipase A1-II 1-like [Jatropha curcas]
4 Hb_000023_170 0.0489954874 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2-like [Jatropha curcas]
5 Hb_132840_060 0.0492055513 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH57-like [Jatropha curcas]
6 Hb_000853_340 0.0527995129 - - PREDICTED: kynurenine--oxoglutarate transaminase 1-like isoform X2 [Populus euphratica]
7 Hb_009189_090 0.054695727 - - protein phosphatase-2c, putative [Ricinus communis]
8 Hb_008032_010 0.0583148519 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
9 Hb_003729_050 0.0696562042 - - PREDICTED: vacuolar iron transporter 1-like isoform X1 [Jatropha curcas]
10 Hb_000173_330 0.0706319877 - - PREDICTED: glutamine synthetase leaf isozyme, chloroplastic [Vitis vinifera]
11 Hb_006355_100 0.0717336932 - - hypothetical protein glysoja_002455 [Glycine soja]
12 Hb_005375_100 0.0724073511 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH57-like [Jatropha curcas]
13 Hb_019762_030 0.0767060753 - - hypothetical protein POPTR_0002s08720g [Populus trichocarpa]
14 Hb_005357_210 0.0790657549 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein MERISTEM L1 [Jatropha curcas]
15 Hb_006649_100 0.0864646551 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
16 Hb_017358_060 0.0879426763 - - PREDICTED: uncharacterized protein LOC105641510 [Jatropha curcas]
17 Hb_001329_060 0.0933345536 - - Polygalacturonase precursor, putative [Ricinus communis]
18 Hb_025048_050 0.0950063919 - - PREDICTED: protein PHYTOCHROME KINASE SUBSTRATE 3 [Jatropha curcas]
19 Hb_063584_010 0.0960311946 - - hypothetical protein JCGZ_10530 [Jatropha curcas]
20 Hb_003411_070 0.0981024852 - - PREDICTED: protein NRT1/ PTR FAMILY 3.1 [Populus euphratica]

Gene co-expression network

sample Hb_008195_100 Hb_008195_100 Hb_155874_020 Hb_155874_020 Hb_008195_100--Hb_155874_020 Hb_003702_010 Hb_003702_010 Hb_008195_100--Hb_003702_010 Hb_000023_170 Hb_000023_170 Hb_008195_100--Hb_000023_170 Hb_132840_060 Hb_132840_060 Hb_008195_100--Hb_132840_060 Hb_000853_340 Hb_000853_340 Hb_008195_100--Hb_000853_340 Hb_009189_090 Hb_009189_090 Hb_008195_100--Hb_009189_090 Hb_155874_020--Hb_132840_060 Hb_155874_020--Hb_000853_340 Hb_155874_020--Hb_003702_010 Hb_155874_020--Hb_000023_170 Hb_008032_010 Hb_008032_010 Hb_155874_020--Hb_008032_010 Hb_003702_010--Hb_000023_170 Hb_003702_010--Hb_009189_090 Hb_003702_010--Hb_132840_060 Hb_005357_210 Hb_005357_210 Hb_003702_010--Hb_005357_210 Hb_003702_010--Hb_000853_340 Hb_000023_170--Hb_009189_090 Hb_000023_170--Hb_132840_060 Hb_000023_170--Hb_008032_010 Hb_000023_170--Hb_005357_210 Hb_132840_060--Hb_008032_010 Hb_003729_050 Hb_003729_050 Hb_132840_060--Hb_003729_050 Hb_132840_060--Hb_009189_090 Hb_006355_100 Hb_006355_100 Hb_132840_060--Hb_006355_100 Hb_019762_030 Hb_019762_030 Hb_000853_340--Hb_019762_030 Hb_000853_340--Hb_000023_170 Hb_000853_340--Hb_132840_060 Hb_009189_090--Hb_008032_010 Hb_009189_090--Hb_006355_100 Hb_009189_090--Hb_005357_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 13.382 0.856935 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.055365 0 0 0 3.27829

CAGE analysis