Hb_001085_280

Information

Type transcription factor
Description TF Family: bHLH
Location Contig1085: 217330-219584
Sequence    

Annotation

kegg
ID pop:POPTR_0001s32160g
description POPTRDRAFT_174909; hypothetical protein
nr
ID XP_011045659.1
description PREDICTED: transcription factor FAMA isoform X2 [Populus euphratica]
swissprot
ID Q56YJ8
description Transcription factor FAMA OS=Arabidopsis thaliana GN=FAMA PE=1 SV=1
trembl
ID A0A067KT33
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01133 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor fama isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02601: 217166-217663
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001085_280 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor FAMA isoform X2 [Populus euphratica]
2 Hb_000016_140 0.060159266 - - glucose-methanol-choline (gmc) oxidoreductase, putative [Ricinus communis]
3 Hb_000334_020 0.0684825286 - - PREDICTED: dynein light chain 2, cytoplasmic [Jatropha curcas]
4 Hb_001284_050 0.0717983209 - - PREDICTED: uncharacterized protein LOC100781779 isoform X1 [Glycine max]
5 Hb_002701_100 0.0776310568 transcription factor TF Family: MIKC PREDICTED: truncated transcription factor CAULIFLOWER A-like [Jatropha curcas]
6 Hb_002253_020 0.083193146 - - PREDICTED: callose synthase 5 [Jatropha curcas]
7 Hb_001033_080 0.0856017429 transcription factor TF Family: C2H2 Transcriptional regulator SUPERMAN, putative [Ricinus communis]
8 Hb_048476_090 0.0960336421 - - conserved hypothetical protein [Ricinus communis]
9 Hb_006355_100 0.0974973905 - - hypothetical protein glysoja_002455 [Glycine soja]
10 Hb_006261_020 0.1001853955 - - Vacuolar cation/proton exchanger 1a, putative [Ricinus communis]
11 Hb_030565_020 0.1029415567 - - PREDICTED: protein ECERIFERUM 26 [Jatropha curcas]
12 Hb_099335_010 0.1043442024 - - PREDICTED: UDP-glycosyltransferase 76C2-like [Populus euphratica]
13 Hb_008032_010 0.1109328787 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
14 Hb_004235_070 0.1109402808 - - acyl carrier protein, putative [Ricinus communis]
15 Hb_003729_050 0.1127070341 - - PREDICTED: vacuolar iron transporter 1-like isoform X1 [Jatropha curcas]
16 Hb_000740_010 0.1167645998 - - cytochrome P450, putative [Ricinus communis]
17 Hb_006555_020 0.1173339243 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 55-like [Jatropha curcas]
18 Hb_009189_090 0.1182253662 - - protein phosphatase-2c, putative [Ricinus communis]
19 Hb_000011_510 0.1186436878 - - Esterase precursor, putative [Ricinus communis]
20 Hb_007676_090 0.1191951035 - - PREDICTED: uncharacterized protein LOC105644038 [Jatropha curcas]

Gene co-expression network

sample Hb_001085_280 Hb_001085_280 Hb_000016_140 Hb_000016_140 Hb_001085_280--Hb_000016_140 Hb_000334_020 Hb_000334_020 Hb_001085_280--Hb_000334_020 Hb_001284_050 Hb_001284_050 Hb_001085_280--Hb_001284_050 Hb_002701_100 Hb_002701_100 Hb_001085_280--Hb_002701_100 Hb_002253_020 Hb_002253_020 Hb_001085_280--Hb_002253_020 Hb_001033_080 Hb_001033_080 Hb_001085_280--Hb_001033_080 Hb_000016_140--Hb_000334_020 Hb_000016_140--Hb_001033_080 Hb_000016_140--Hb_001284_050 Hb_000016_140--Hb_002701_100 Hb_006355_100 Hb_006355_100 Hb_000016_140--Hb_006355_100 Hb_000334_020--Hb_001033_080 Hb_000334_020--Hb_001284_050 Hb_000334_020--Hb_002253_020 Hb_048476_090 Hb_048476_090 Hb_000334_020--Hb_048476_090 Hb_001284_050--Hb_048476_090 Hb_099335_010 Hb_099335_010 Hb_001284_050--Hb_099335_010 Hb_006261_020 Hb_006261_020 Hb_001284_050--Hb_006261_020 Hb_001284_050--Hb_001033_080 Hb_002701_100--Hb_006355_100 Hb_003729_050 Hb_003729_050 Hb_002701_100--Hb_003729_050 Hb_008032_010 Hb_008032_010 Hb_002701_100--Hb_008032_010 Hb_132840_060 Hb_132840_060 Hb_002701_100--Hb_132840_060 Hb_002701_100--Hb_000334_020 Hb_030565_020 Hb_030565_020 Hb_002253_020--Hb_030565_020 Hb_011716_140 Hb_011716_140 Hb_002253_020--Hb_011716_140 Hb_002253_020--Hb_006261_020 Hb_004235_070 Hb_004235_070 Hb_002253_020--Hb_004235_070 Hb_002253_020--Hb_001033_080 Hb_002028_070 Hb_002028_070 Hb_001033_080--Hb_002028_070 Hb_009189_090 Hb_009189_090 Hb_001033_080--Hb_009189_090 Hb_005357_210 Hb_005357_210 Hb_001033_080--Hb_005357_210 Hb_002006_080 Hb_002006_080 Hb_001033_080--Hb_002006_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0415192 23.586 0.760171 0.0313413 0.02745
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0356632 0 0.0524623 0.0448703 11.2113

CAGE analysis