Hb_011716_140

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig11716: 112532-114228
Sequence    

Annotation

kegg
ID pop:POPTR_0006s15480g
description POPTRDRAFT_653302; hypothetical protein
nr
ID XP_012076903.1
description PREDICTED: myb-like protein J [Jatropha curcas]
swissprot
ID Q8S9H7
description Transcription factor DIVARICATA OS=Antirrhinum majus GN=DIVARICATA PE=2 SV=1
trembl
ID A0A067KNF9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07386 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor myb1r1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05325: 112687-113975
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011716_140 0.0 transcription factor TF Family: MYB-related PREDICTED: myb-like protein J [Jatropha curcas]
2 Hb_002078_280 0.0359772804 - - chlorophyll a/b-binding protein type II precursor [Populus trichocarpa]
3 Hb_030565_020 0.0568360962 - - PREDICTED: protein ECERIFERUM 26 [Jatropha curcas]
4 Hb_002253_020 0.0585479 - - PREDICTED: callose synthase 5 [Jatropha curcas]
5 Hb_011512_100 0.0590898482 - - PREDICTED: uncharacterized protein LOC105650382 isoform X1 [Jatropha curcas]
6 Hb_004627_050 0.0653459824 - - Chlorophyll a-b binding protein 6A [Morus notabilis]
7 Hb_002259_020 0.0767540613 - - PREDICTED: uncharacterized protein LOC105646333 [Jatropha curcas]
8 Hb_002561_040 0.0777896679 - - Photosynthetic electron transfer C [Theobroma cacao]
9 Hb_006261_020 0.079277425 - - Vacuolar cation/proton exchanger 1a, putative [Ricinus communis]
10 Hb_004235_070 0.0813499785 - - acyl carrier protein, putative [Ricinus communis]
11 Hb_006775_100 0.0819874705 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
12 Hb_000188_010 0.0826751586 - - PREDICTED: cytochrome P450 94C1-like [Jatropha curcas]
13 Hb_001638_060 0.0844255931 - - PREDICTED: rho GTPase-activating protein 3-like isoform X1 [Populus euphratica]
14 Hb_001233_050 0.0934935778 - - Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplast precursor, putative [Ricinus communis]
15 Hb_000210_210 0.0938318241 - - PREDICTED: uncharacterized protein LOC105635822 isoform X1 [Jatropha curcas]
16 Hb_000030_070 0.095524193 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002245_050 0.0965883164 - - Oxygen-evolving enhancer protein 3-1, chloroplast precursor, putative [Ricinus communis]
18 Hb_000979_210 0.0967565163 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001942_060 0.0969446287 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000084_210 0.0974482379 - - hypothetical protein POPTR_0016s08050g [Populus trichocarpa]

Gene co-expression network

sample Hb_011716_140 Hb_011716_140 Hb_002078_280 Hb_002078_280 Hb_011716_140--Hb_002078_280 Hb_030565_020 Hb_030565_020 Hb_011716_140--Hb_030565_020 Hb_002253_020 Hb_002253_020 Hb_011716_140--Hb_002253_020 Hb_011512_100 Hb_011512_100 Hb_011716_140--Hb_011512_100 Hb_004627_050 Hb_004627_050 Hb_011716_140--Hb_004627_050 Hb_002259_020 Hb_002259_020 Hb_011716_140--Hb_002259_020 Hb_002078_280--Hb_011512_100 Hb_002078_280--Hb_004627_050 Hb_001638_060 Hb_001638_060 Hb_002078_280--Hb_001638_060 Hb_006261_020 Hb_006261_020 Hb_002078_280--Hb_006261_020 Hb_001233_050 Hb_001233_050 Hb_002078_280--Hb_001233_050 Hb_030565_020--Hb_002253_020 Hb_030565_020--Hb_011512_100 Hb_030565_020--Hb_002259_020 Hb_004223_120 Hb_004223_120 Hb_030565_020--Hb_004223_120 Hb_030565_020--Hb_002078_280 Hb_000334_020 Hb_000334_020 Hb_002253_020--Hb_000334_020 Hb_002253_020--Hb_006261_020 Hb_004235_070 Hb_004235_070 Hb_002253_020--Hb_004235_070 Hb_001033_080 Hb_001033_080 Hb_002253_020--Hb_001033_080 Hb_011512_100--Hb_004627_050 Hb_011512_100--Hb_002259_020 Hb_000979_210 Hb_000979_210 Hb_011512_100--Hb_000979_210 Hb_004627_050--Hb_002259_020 Hb_000172_660 Hb_000172_660 Hb_004627_050--Hb_000172_660 Hb_002245_050 Hb_002245_050 Hb_004627_050--Hb_002245_050 Hb_002929_030 Hb_002929_030 Hb_004627_050--Hb_002929_030 Hb_002259_020--Hb_004223_120 Hb_002259_020--Hb_002078_280 Hb_000847_040 Hb_000847_040 Hb_002259_020--Hb_000847_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.561595 20.5058 1.96138 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.033871 0 0.0135813 10.5545

CAGE analysis