Hb_011512_100

Information

Type -
Description -
Location Contig11512: 50680-51954
Sequence    

Annotation

kegg
ID rcu:RCOM_1023270
description hypothetical protein
nr
ID XP_012092663.1
description PREDICTED: uncharacterized protein LOC105650382 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067J9A9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06427 PE=4 SV=1
Gene Ontology
ID GO:0009570
description PREDICTED: uncharacterized protein LOC105650382 isoform X1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04569: 49826-51992 , PASA_asmbl_04570: 50710-51992
cDNA
(Sanger)
(ID:Location)		 013_I02.ab1: 50973-51992

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011512_100 0.0 - - PREDICTED: uncharacterized protein LOC105650382 isoform X1 [Jatropha curcas]
2 Hb_004627_050 0.0246597917 - - Chlorophyll a-b binding protein 6A [Morus notabilis]
3 Hb_002259_020 0.0500100453 - - PREDICTED: uncharacterized protein LOC105646333 [Jatropha curcas]
4 Hb_002078_280 0.0513029028 - - chlorophyll a/b-binding protein type II precursor [Populus trichocarpa]
5 Hb_011716_140 0.0590898482 transcription factor TF Family: MYB-related PREDICTED: myb-like protein J [Jatropha curcas]
6 Hb_000979_210 0.0593334153 - - conserved hypothetical protein [Ricinus communis]
7 Hb_030565_020 0.0612761495 - - PREDICTED: protein ECERIFERUM 26 [Jatropha curcas]
8 Hb_000172_660 0.0672507599 - - flavonoid 3-hydroxylase, putative [Ricinus communis]
9 Hb_002245_050 0.0682086039 - - Oxygen-evolving enhancer protein 3-1, chloroplast precursor, putative [Ricinus communis]
10 Hb_000847_040 0.0689966833 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 9 [Jatropha curcas]
11 Hb_002929_030 0.0695180263 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
12 Hb_011316_080 0.0713413801 - - Cucumisin precursor, putative [Ricinus communis]
13 Hb_000635_240 0.0715446278 - - chlorophyll a/b-binding protein type II precursor [Populus trichocarpa]
14 Hb_000210_210 0.0727359711 - - PREDICTED: uncharacterized protein LOC105635822 isoform X1 [Jatropha curcas]
15 Hb_002006_080 0.07503063 - - PREDICTED: CRAL-TRIO domain-containing protein YKL091C-like isoform X2 [Citrus sinensis]
16 Hb_004235_070 0.0751293578 - - acyl carrier protein, putative [Ricinus communis]
17 Hb_089140_130 0.076798975 - - hypothetical protein POPTR_0006s14510g [Populus trichocarpa]
18 Hb_002253_020 0.0776401993 - - PREDICTED: callose synthase 5 [Jatropha curcas]
19 Hb_006261_020 0.078097825 - - Vacuolar cation/proton exchanger 1a, putative [Ricinus communis]
20 Hb_032880_010 0.0784603884 - - PREDICTED: beta-glucosidase 24-like [Jatropha curcas]

Gene co-expression network

sample Hb_011512_100 Hb_011512_100 Hb_004627_050 Hb_004627_050 Hb_011512_100--Hb_004627_050 Hb_002259_020 Hb_002259_020 Hb_011512_100--Hb_002259_020 Hb_002078_280 Hb_002078_280 Hb_011512_100--Hb_002078_280 Hb_011716_140 Hb_011716_140 Hb_011512_100--Hb_011716_140 Hb_000979_210 Hb_000979_210 Hb_011512_100--Hb_000979_210 Hb_030565_020 Hb_030565_020 Hb_011512_100--Hb_030565_020 Hb_004627_050--Hb_002259_020 Hb_004627_050--Hb_002078_280 Hb_000172_660 Hb_000172_660 Hb_004627_050--Hb_000172_660 Hb_002245_050 Hb_002245_050 Hb_004627_050--Hb_002245_050 Hb_002929_030 Hb_002929_030 Hb_004627_050--Hb_002929_030 Hb_002259_020--Hb_030565_020 Hb_004223_120 Hb_004223_120 Hb_002259_020--Hb_004223_120 Hb_002259_020--Hb_002078_280 Hb_000847_040 Hb_000847_040 Hb_002259_020--Hb_000847_040 Hb_002078_280--Hb_011716_140 Hb_001638_060 Hb_001638_060 Hb_002078_280--Hb_001638_060 Hb_006261_020 Hb_006261_020 Hb_002078_280--Hb_006261_020 Hb_001233_050 Hb_001233_050 Hb_002078_280--Hb_001233_050 Hb_011716_140--Hb_030565_020 Hb_002253_020 Hb_002253_020 Hb_011716_140--Hb_002253_020 Hb_011716_140--Hb_004627_050 Hb_011716_140--Hb_002259_020 Hb_002006_080 Hb_002006_080 Hb_000979_210--Hb_002006_080 Hb_000979_210--Hb_000847_040 Hb_011316_080 Hb_011316_080 Hb_000979_210--Hb_011316_080 Hb_000210_210 Hb_000210_210 Hb_000979_210--Hb_000210_210 Hb_089140_130 Hb_089140_130 Hb_000979_210--Hb_089140_130 Hb_000635_240 Hb_000635_240 Hb_000979_210--Hb_000635_240 Hb_030565_020--Hb_002253_020 Hb_030565_020--Hb_004223_120 Hb_030565_020--Hb_002078_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.951026 72.387 9.71852 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.106527 0.0418898 0 0.0168626 34.5197

CAGE analysis