Hb_004627_050

Information

Type -
Description -
Location Contig4627: 60854-62311
Sequence    

Annotation

kegg
ID cmo:103494548
description chlorophyll a-b binding protein 6A, chloroplastic
nr
ID XP_010099628.1
description Chlorophyll a-b binding protein 6A [Morus notabilis]
swissprot
ID P12360
description Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1
trembl
ID W9RZD3
description Chlorophyll a-b binding protein 6A OS=Morus notabilis GN=L484_013420 PE=4 SV=1
Gene Ontology
ID GO:0016020
description chlorophyll a-b binding protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43827: 60843-62225
cDNA
(Sanger)
(ID:Location)		 001_M24.ab1: 60861-62061 , 007_G19.ab1: 60843-62056 , 008_G04.ab1: 60855-62053 , 017_B20.ab1: 61050-61979

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004627_050 0.0 - - Chlorophyll a-b binding protein 6A [Morus notabilis]
2 Hb_011512_100 0.0246597917 - - PREDICTED: uncharacterized protein LOC105650382 isoform X1 [Jatropha curcas]
3 Hb_002259_020 0.0500913719 - - PREDICTED: uncharacterized protein LOC105646333 [Jatropha curcas]
4 Hb_002078_280 0.0513883427 - - chlorophyll a/b-binding protein type II precursor [Populus trichocarpa]
5 Hb_000172_660 0.0536453004 - - flavonoid 3-hydroxylase, putative [Ricinus communis]
6 Hb_002245_050 0.0608359317 - - Oxygen-evolving enhancer protein 3-1, chloroplast precursor, putative [Ricinus communis]
7 Hb_002929_030 0.0641614139 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
8 Hb_011716_140 0.0653459824 transcription factor TF Family: MYB-related PREDICTED: myb-like protein J [Jatropha curcas]
9 Hb_000635_240 0.0672213277 - - chlorophyll a/b-binding protein type II precursor [Populus trichocarpa]
10 Hb_000979_210 0.0689825747 - - conserved hypothetical protein [Ricinus communis]
11 Hb_032880_010 0.0707237024 - - PREDICTED: beta-glucosidase 24-like [Jatropha curcas]
12 Hb_011316_080 0.0745585941 - - Cucumisin precursor, putative [Ricinus communis]
13 Hb_000084_210 0.0758941355 - - hypothetical protein POPTR_0016s08050g [Populus trichocarpa]
14 Hb_030565_020 0.0761636048 - - PREDICTED: protein ECERIFERUM 26 [Jatropha curcas]
15 Hb_000210_210 0.0762248056 - - PREDICTED: uncharacterized protein LOC105635822 isoform X1 [Jatropha curcas]
16 Hb_009771_010 0.0774834046 - - PREDICTED: glycerol-3-phosphate 2-O-acyltransferase 6 [Populus euphratica]
17 Hb_000847_040 0.0776502432 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 9 [Jatropha curcas]
18 Hb_001153_170 0.0780320237 - - PREDICTED: protein HOTHEAD [Populus euphratica]
19 Hb_089140_130 0.0784830519 - - hypothetical protein POPTR_0006s14510g [Populus trichocarpa]
20 Hb_001233_050 0.0793114545 - - Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_004627_050 Hb_004627_050 Hb_011512_100 Hb_011512_100 Hb_004627_050--Hb_011512_100 Hb_002259_020 Hb_002259_020 Hb_004627_050--Hb_002259_020 Hb_002078_280 Hb_002078_280 Hb_004627_050--Hb_002078_280 Hb_000172_660 Hb_000172_660 Hb_004627_050--Hb_000172_660 Hb_002245_050 Hb_002245_050 Hb_004627_050--Hb_002245_050 Hb_002929_030 Hb_002929_030 Hb_004627_050--Hb_002929_030 Hb_011512_100--Hb_002259_020 Hb_011512_100--Hb_002078_280 Hb_011716_140 Hb_011716_140 Hb_011512_100--Hb_011716_140 Hb_000979_210 Hb_000979_210 Hb_011512_100--Hb_000979_210 Hb_030565_020 Hb_030565_020 Hb_011512_100--Hb_030565_020 Hb_002259_020--Hb_030565_020 Hb_004223_120 Hb_004223_120 Hb_002259_020--Hb_004223_120 Hb_002259_020--Hb_002078_280 Hb_000847_040 Hb_000847_040 Hb_002259_020--Hb_000847_040 Hb_002078_280--Hb_011716_140 Hb_001638_060 Hb_001638_060 Hb_002078_280--Hb_001638_060 Hb_006261_020 Hb_006261_020 Hb_002078_280--Hb_006261_020 Hb_001233_050 Hb_001233_050 Hb_002078_280--Hb_001233_050 Hb_031377_010 Hb_031377_010 Hb_000172_660--Hb_031377_010 Hb_000172_660--Hb_002245_050 Hb_007853_030 Hb_007853_030 Hb_000172_660--Hb_007853_030 Hb_000172_660--Hb_002929_030 Hb_032880_010 Hb_032880_010 Hb_000172_660--Hb_032880_010 Hb_000635_240 Hb_000635_240 Hb_002245_050--Hb_000635_240 Hb_000018_110 Hb_000018_110 Hb_002245_050--Hb_000018_110 Hb_000821_030 Hb_000821_030 Hb_002245_050--Hb_000821_030 Hb_001433_210 Hb_001433_210 Hb_002245_050--Hb_001433_210 Hb_000142_050 Hb_000142_050 Hb_002245_050--Hb_000142_050 Hb_002245_050--Hb_002929_030 Hb_009771_010 Hb_009771_010 Hb_002929_030--Hb_009771_010 Hb_001546_140 Hb_001546_140 Hb_002929_030--Hb_001546_140 Hb_001153_170 Hb_001153_170 Hb_002929_030--Hb_001153_170 Hb_002929_030--Hb_000635_240 Hb_007617_030 Hb_007617_030 Hb_002929_030--Hb_007617_030 Hb_089140_130 Hb_089140_130 Hb_002929_030--Hb_089140_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.324886 11.377 700.135 107.399 0.0827705 0.184563
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.613695 0.519824 0 0.223679 344.85

CAGE analysis