Hb_002259_020

Information

Type -
Description -
Location Contig2259: 13302-14380
Sequence    

Annotation

kegg
ID rcu:RCOM_0613700
description hypothetical protein
nr
ID XP_012087566.1
description PREDICTED: uncharacterized protein LOC105646333 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JLP0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24289 PE=4 SV=1
Gene Ontology
ID GO:0009507
description PREDICTED: uncharacterized protein LOC105646333

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23455: 13391-14389
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002259_020 0.0 - - PREDICTED: uncharacterized protein LOC105646333 [Jatropha curcas]
2 Hb_011512_100 0.0500100453 - - PREDICTED: uncharacterized protein LOC105650382 isoform X1 [Jatropha curcas]
3 Hb_004627_050 0.0500913719 - - Chlorophyll a-b binding protein 6A [Morus notabilis]
4 Hb_030565_020 0.0630163703 - - PREDICTED: protein ECERIFERUM 26 [Jatropha curcas]
5 Hb_004223_120 0.0725308285 - - PREDICTED: protein SPA, chloroplastic [Jatropha curcas]
6 Hb_002078_280 0.0735745049 - - chlorophyll a/b-binding protein type II precursor [Populus trichocarpa]
7 Hb_000847_040 0.0736618774 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 9 [Jatropha curcas]
8 Hb_002929_030 0.0740885759 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
9 Hb_011716_140 0.0767540613 transcription factor TF Family: MYB-related PREDICTED: myb-like protein J [Jatropha curcas]
10 Hb_000210_210 0.0780242704 - - PREDICTED: uncharacterized protein LOC105635822 isoform X1 [Jatropha curcas]
11 Hb_002028_070 0.0784564824 - - PREDICTED: circadian locomoter output cycles protein kaput [Jatropha curcas]
12 Hb_025048_050 0.0784611887 - - PREDICTED: protein PHYTOCHROME KINASE SUBSTRATE 3 [Jatropha curcas]
13 Hb_000635_240 0.0787745447 - - chlorophyll a/b-binding protein type II precursor [Populus trichocarpa]
14 Hb_011316_080 0.0788964837 - - Cucumisin precursor, putative [Ricinus communis]
15 Hb_000979_210 0.0797722826 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001946_070 0.0813565553 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
17 Hb_089140_130 0.0816082804 - - hypothetical protein POPTR_0006s14510g [Populus trichocarpa]
18 Hb_005357_210 0.0819964649 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein MERISTEM L1 [Jatropha curcas]
19 Hb_009771_010 0.0827036172 - - PREDICTED: glycerol-3-phosphate 2-O-acyltransferase 6 [Populus euphratica]
20 Hb_001153_170 0.0830029159 - - PREDICTED: protein HOTHEAD [Populus euphratica]

Gene co-expression network

sample Hb_002259_020 Hb_002259_020 Hb_011512_100 Hb_011512_100 Hb_002259_020--Hb_011512_100 Hb_004627_050 Hb_004627_050 Hb_002259_020--Hb_004627_050 Hb_030565_020 Hb_030565_020 Hb_002259_020--Hb_030565_020 Hb_004223_120 Hb_004223_120 Hb_002259_020--Hb_004223_120 Hb_002078_280 Hb_002078_280 Hb_002259_020--Hb_002078_280 Hb_000847_040 Hb_000847_040 Hb_002259_020--Hb_000847_040 Hb_011512_100--Hb_004627_050 Hb_011512_100--Hb_002078_280 Hb_011716_140 Hb_011716_140 Hb_011512_100--Hb_011716_140 Hb_000979_210 Hb_000979_210 Hb_011512_100--Hb_000979_210 Hb_011512_100--Hb_030565_020 Hb_004627_050--Hb_002078_280 Hb_000172_660 Hb_000172_660 Hb_004627_050--Hb_000172_660 Hb_002245_050 Hb_002245_050 Hb_004627_050--Hb_002245_050 Hb_002929_030 Hb_002929_030 Hb_004627_050--Hb_002929_030 Hb_030565_020--Hb_011716_140 Hb_002253_020 Hb_002253_020 Hb_030565_020--Hb_002253_020 Hb_030565_020--Hb_004223_120 Hb_030565_020--Hb_002078_280 Hb_000187_100 Hb_000187_100 Hb_004223_120--Hb_000187_100 Hb_009293_030 Hb_009293_030 Hb_004223_120--Hb_009293_030 Hb_006649_100 Hb_006649_100 Hb_004223_120--Hb_006649_100 Hb_001401_050 Hb_001401_050 Hb_004223_120--Hb_001401_050 Hb_002078_280--Hb_011716_140 Hb_001638_060 Hb_001638_060 Hb_002078_280--Hb_001638_060 Hb_006261_020 Hb_006261_020 Hb_002078_280--Hb_006261_020 Hb_001233_050 Hb_001233_050 Hb_002078_280--Hb_001233_050 Hb_011316_080 Hb_011316_080 Hb_000847_040--Hb_011316_080 Hb_002006_080 Hb_002006_080 Hb_000847_040--Hb_002006_080 Hb_089140_130 Hb_089140_130 Hb_000847_040--Hb_089140_130 Hb_000847_040--Hb_000979_210 Hb_001153_170 Hb_001153_170 Hb_000847_040--Hb_001153_170 Hb_009771_010 Hb_009771_010 Hb_000847_040--Hb_009771_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0764209 0.55045 53.4143 6.75504 0 0.0899166
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.111276 22.8428

CAGE analysis