Hb_000172_660

Information

Type -
Description -
Location Contig172: 715176-717093
Sequence    

Annotation

kegg
ID rcu:RCOM_0193830
description flavonoid 3-hydroxylase, putative (EC:1.14.13.88)
nr
ID XP_002532045.1
description flavonoid 3-hydroxylase, putative [Ricinus communis]
swissprot
ID H2DH18
description Cytochrome P450 CYP736A12 OS=Panax ginseng PE=2 SV=1
trembl
ID B9T1C6
description Flavonoid 3-hydroxylase, putative OS=Ricinus communis GN=RCOM_0193830 PE=3 SV=1
Gene Ontology
ID GO:0005506
description cytochrome p450 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16204: 715307-717114
cDNA
(Sanger)
(ID:Location)		 031_M16.ab1: 715307-716111 , 032_G07.ab1: 715304-716069 , 051_M21.ab1: 715307-716117

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000172_660 0.0 - - flavonoid 3-hydroxylase, putative [Ricinus communis]
2 Hb_031377_010 0.0487597958 transcription factor TF Family: C2C2-YABBY unknown [Populus trichocarpa]
3 Hb_004627_050 0.0536453004 - - Chlorophyll a-b binding protein 6A [Morus notabilis]
4 Hb_002245_050 0.0585839355 - - Oxygen-evolving enhancer protein 3-1, chloroplast precursor, putative [Ricinus communis]
5 Hb_007853_030 0.0602863684 - - structural molecule, putative [Ricinus communis]
6 Hb_002929_030 0.0620294847 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
7 Hb_032880_010 0.0641660311 - - PREDICTED: beta-glucosidase 24-like [Jatropha curcas]
8 Hb_000144_130 0.0649346756 - - conserved hypothetical protein [Ricinus communis]
9 Hb_011930_190 0.0656005587 - - PREDICTED: probable beta-1,3-galactosyltransferase 17 isoform X1 [Jatropha curcas]
10 Hb_001166_010 0.0659267136 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
11 Hb_011512_100 0.0672507599 - - PREDICTED: uncharacterized protein LOC105650382 isoform X1 [Jatropha curcas]
12 Hb_002044_100 0.0702484135 - - PREDICTED: uncharacterized protein LOC105643555 [Jatropha curcas]
13 Hb_007617_030 0.072681977 - - hypothetical protein JCGZ_26801 [Jatropha curcas]
14 Hb_001671_070 0.0730611104 - - kinase, putative [Ricinus communis]
15 Hb_000635_240 0.0738353586 - - chlorophyll a/b-binding protein type II precursor [Populus trichocarpa]
16 Hb_001546_140 0.0745222966 - - Auxin-binding protein ABP19a precursor, putative [Ricinus communis]
17 Hb_000142_050 0.0778423093 - - PREDICTED: beta-glucosidase 18-like isoform X1 [Populus euphratica]
18 Hb_001153_170 0.0793466955 - - PREDICTED: protein HOTHEAD [Populus euphratica]
19 Hb_009771_010 0.0795726393 - - PREDICTED: glycerol-3-phosphate 2-O-acyltransferase 6 [Populus euphratica]
20 Hb_000018_110 0.080203238 - - hypothetical protein POPTR_0018s00370g [Populus trichocarpa]

Gene co-expression network

sample Hb_000172_660 Hb_000172_660 Hb_031377_010 Hb_031377_010 Hb_000172_660--Hb_031377_010 Hb_004627_050 Hb_004627_050 Hb_000172_660--Hb_004627_050 Hb_002245_050 Hb_002245_050 Hb_000172_660--Hb_002245_050 Hb_007853_030 Hb_007853_030 Hb_000172_660--Hb_007853_030 Hb_002929_030 Hb_002929_030 Hb_000172_660--Hb_002929_030 Hb_032880_010 Hb_032880_010 Hb_000172_660--Hb_032880_010 Hb_000144_130 Hb_000144_130 Hb_031377_010--Hb_000144_130 Hb_001671_070 Hb_001671_070 Hb_031377_010--Hb_001671_070 Hb_002044_100 Hb_002044_100 Hb_031377_010--Hb_002044_100 Hb_007617_030 Hb_007617_030 Hb_031377_010--Hb_007617_030 Hb_000510_250 Hb_000510_250 Hb_031377_010--Hb_000510_250 Hb_011512_100 Hb_011512_100 Hb_004627_050--Hb_011512_100 Hb_002259_020 Hb_002259_020 Hb_004627_050--Hb_002259_020 Hb_002078_280 Hb_002078_280 Hb_004627_050--Hb_002078_280 Hb_004627_050--Hb_002245_050 Hb_004627_050--Hb_002929_030 Hb_000635_240 Hb_000635_240 Hb_002245_050--Hb_000635_240 Hb_000018_110 Hb_000018_110 Hb_002245_050--Hb_000018_110 Hb_000821_030 Hb_000821_030 Hb_002245_050--Hb_000821_030 Hb_001433_210 Hb_001433_210 Hb_002245_050--Hb_001433_210 Hb_000142_050 Hb_000142_050 Hb_002245_050--Hb_000142_050 Hb_002245_050--Hb_002929_030 Hb_007681_010 Hb_007681_010 Hb_007853_030--Hb_007681_010 Hb_001166_010 Hb_001166_010 Hb_007853_030--Hb_001166_010 Hb_000069_220 Hb_000069_220 Hb_007853_030--Hb_000069_220 Hb_002042_090 Hb_002042_090 Hb_007853_030--Hb_002042_090 Hb_000069_440 Hb_000069_440 Hb_007853_030--Hb_000069_440 Hb_009771_010 Hb_009771_010 Hb_002929_030--Hb_009771_010 Hb_001546_140 Hb_001546_140 Hb_002929_030--Hb_001546_140 Hb_001153_170 Hb_001153_170 Hb_002929_030--Hb_001153_170 Hb_002929_030--Hb_000635_240 Hb_002929_030--Hb_007617_030 Hb_089140_130 Hb_089140_130 Hb_002929_030--Hb_089140_130 Hb_032880_010--Hb_031377_010 Hb_032880_010--Hb_001671_070 Hb_032880_010--Hb_002929_030 Hb_032880_010--Hb_001153_170 Hb_032880_010--Hb_004627_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.662474 35.359 7.99693 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0499275 0.039283 0 0 18.5441

CAGE analysis