Hb_000144_130

Information

Type -
Description -
Location Contig144: 221641-222108
Sequence    

Annotation

kegg
ID rcu:RCOM_0516950
description hypothetical protein
nr
ID XP_002528742.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SRX3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0516950 PE=4 SV=1
Gene Ontology
ID GO:0050896
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000144_130 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002044_100 0.0326643503 - - PREDICTED: uncharacterized protein LOC105643555 [Jatropha curcas]
3 Hb_000510_250 0.0345141425 transcription factor TF Family: AUX/IAA auxin-induced protein aux28 [Populus trichocarpa]
4 Hb_031377_010 0.0381491025 transcription factor TF Family: C2C2-YABBY unknown [Populus trichocarpa]
5 Hb_001671_070 0.0487453575 - - kinase, putative [Ricinus communis]
6 Hb_001166_010 0.051005552 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
7 Hb_000130_340 0.063027086 - - -
8 Hb_011930_190 0.063237969 - - PREDICTED: probable beta-1,3-galactosyltransferase 17 isoform X1 [Jatropha curcas]
9 Hb_002259_120 0.0637327704 - - tonoplast intrinsic protein, putative [Ricinus communis]
10 Hb_007681_010 0.0644257306 - - hypothetical protein RCOM_2128750 [Ricinus communis]
11 Hb_000172_660 0.0649346756 - - flavonoid 3-hydroxylase, putative [Ricinus communis]
12 Hb_007853_030 0.0672278793 - - structural molecule, putative [Ricinus communis]
13 Hb_001646_030 0.067647164 - - PREDICTED: ribonuclease 3-like protein 3 [Jatropha curcas]
14 Hb_007617_030 0.0689410296 - - hypothetical protein JCGZ_26801 [Jatropha curcas]
15 Hb_000739_010 0.0694893961 - - PREDICTED: serine carboxypeptidase II-3-like [Vitis vinifera]
16 Hb_003050_140 0.0758297022 - - PREDICTED: potassium channel KAT1 [Jatropha curcas]
17 Hb_012675_040 0.0758570971 - - PREDICTED: uncharacterized protein LOC105647773 isoform X1 [Jatropha curcas]
18 Hb_032880_010 0.0775362247 - - PREDICTED: beta-glucosidase 24-like [Jatropha curcas]
19 Hb_001253_050 0.0818796895 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
20 Hb_005460_040 0.0841448731 - - PREDICTED: long chain acyl-CoA synthetase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000144_130 Hb_000144_130 Hb_002044_100 Hb_002044_100 Hb_000144_130--Hb_002044_100 Hb_000510_250 Hb_000510_250 Hb_000144_130--Hb_000510_250 Hb_031377_010 Hb_031377_010 Hb_000144_130--Hb_031377_010 Hb_001671_070 Hb_001671_070 Hb_000144_130--Hb_001671_070 Hb_001166_010 Hb_001166_010 Hb_000144_130--Hb_001166_010 Hb_000130_340 Hb_000130_340 Hb_000144_130--Hb_000130_340 Hb_002044_100--Hb_000510_250 Hb_002044_100--Hb_031377_010 Hb_002044_100--Hb_001166_010 Hb_011930_190 Hb_011930_190 Hb_002044_100--Hb_011930_190 Hb_007681_010 Hb_007681_010 Hb_002044_100--Hb_007681_010 Hb_000510_250--Hb_031377_010 Hb_002259_120 Hb_002259_120 Hb_000510_250--Hb_002259_120 Hb_000510_250--Hb_001166_010 Hb_012675_040 Hb_012675_040 Hb_000510_250--Hb_012675_040 Hb_031377_010--Hb_001671_070 Hb_000172_660 Hb_000172_660 Hb_031377_010--Hb_000172_660 Hb_007617_030 Hb_007617_030 Hb_031377_010--Hb_007617_030 Hb_000160_260 Hb_000160_260 Hb_001671_070--Hb_000160_260 Hb_000735_190 Hb_000735_190 Hb_001671_070--Hb_000735_190 Hb_032880_010 Hb_032880_010 Hb_001671_070--Hb_032880_010 Hb_001671_070--Hb_000130_340 Hb_007853_030 Hb_007853_030 Hb_001166_010--Hb_007853_030 Hb_001166_010--Hb_031377_010 Hb_019053_040 Hb_019053_040 Hb_001166_010--Hb_019053_040 Hb_000130_340--Hb_002259_120 Hb_000130_340--Hb_007617_030 Hb_006594_030 Hb_006594_030 Hb_000130_340--Hb_006594_030 Hb_001646_030 Hb_001646_030 Hb_000130_340--Hb_001646_030 Hb_000739_010 Hb_000739_010 Hb_000130_340--Hb_000739_010 Hb_000130_340--Hb_031377_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.31369 197.744 61.5373 0 0.0575056
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.149954 0 0 0 91.9156

CAGE analysis