Hb_000510_250

Information

Type transcription factor
Description TF Family: AUX/IAA
Location Contig510: 258045-260974
Sequence    

Annotation

kegg
ID pop:POPTR_0002s04580g
description POPTRDRAFT_643213; auxin-induced protein aux28
nr
ID XP_002302075.1
description auxin-induced protein aux28 [Populus trichocarpa]
swissprot
ID P13089
description Auxin-induced protein AUX28 OS=Glycine max GN=AUX28 PE=2 SV=1
trembl
ID L0AUG3
description Auxin-responsive protein OS=Populus tomentosa PE=3 SV=1
Gene Ontology
ID GO:0005634
description auxin-induced protein aux28

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46305: 257965-260855
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000510_250 0.0 transcription factor TF Family: AUX/IAA auxin-induced protein aux28 [Populus trichocarpa]
2 Hb_000144_130 0.0345141425 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002044_100 0.0483720915 - - PREDICTED: uncharacterized protein LOC105643555 [Jatropha curcas]
4 Hb_031377_010 0.0583032069 transcription factor TF Family: C2C2-YABBY unknown [Populus trichocarpa]
5 Hb_002259_120 0.0587409225 - - tonoplast intrinsic protein, putative [Ricinus communis]
6 Hb_001166_010 0.0598278219 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
7 Hb_012675_040 0.0611888705 - - PREDICTED: uncharacterized protein LOC105647773 isoform X1 [Jatropha curcas]
8 Hb_001646_030 0.0638953253 - - PREDICTED: ribonuclease 3-like protein 3 [Jatropha curcas]
9 Hb_000739_010 0.0647948918 - - PREDICTED: serine carboxypeptidase II-3-like [Vitis vinifera]
10 Hb_001671_070 0.0663613108 - - kinase, putative [Ricinus communis]
11 Hb_007681_010 0.0673103004 - - hypothetical protein RCOM_2128750 [Ricinus communis]
12 Hb_000130_340 0.0693316237 - - -
13 Hb_011930_190 0.0749040945 - - PREDICTED: probable beta-1,3-galactosyltransferase 17 isoform X1 [Jatropha curcas]
14 Hb_001300_190 0.0757447657 - - conserved hypothetical protein [Ricinus communis]
15 Hb_007853_030 0.0783005496 - - structural molecule, putative [Ricinus communis]
16 Hb_000189_300 0.0785802067 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
17 Hb_167188_020 0.0788860951 - - PREDICTED: uncharacterized protein At1g05835 [Jatropha curcas]
18 Hb_003050_140 0.0803394011 - - PREDICTED: potassium channel KAT1 [Jatropha curcas]
19 Hb_012807_040 0.0827152284 - - hypothetical protein POPTR_0009s01390g [Populus trichocarpa]
20 Hb_002893_220 0.0827660826 - - hypothetical protein B456_001G004300 [Gossypium raimondii]

Gene co-expression network

sample Hb_000510_250 Hb_000510_250 Hb_000144_130 Hb_000144_130 Hb_000510_250--Hb_000144_130 Hb_002044_100 Hb_002044_100 Hb_000510_250--Hb_002044_100 Hb_031377_010 Hb_031377_010 Hb_000510_250--Hb_031377_010 Hb_002259_120 Hb_002259_120 Hb_000510_250--Hb_002259_120 Hb_001166_010 Hb_001166_010 Hb_000510_250--Hb_001166_010 Hb_012675_040 Hb_012675_040 Hb_000510_250--Hb_012675_040 Hb_000144_130--Hb_002044_100 Hb_000144_130--Hb_031377_010 Hb_001671_070 Hb_001671_070 Hb_000144_130--Hb_001671_070 Hb_000144_130--Hb_001166_010 Hb_000130_340 Hb_000130_340 Hb_000144_130--Hb_000130_340 Hb_002044_100--Hb_031377_010 Hb_002044_100--Hb_001166_010 Hb_011930_190 Hb_011930_190 Hb_002044_100--Hb_011930_190 Hb_007681_010 Hb_007681_010 Hb_002044_100--Hb_007681_010 Hb_031377_010--Hb_001671_070 Hb_000172_660 Hb_000172_660 Hb_031377_010--Hb_000172_660 Hb_007617_030 Hb_007617_030 Hb_031377_010--Hb_007617_030 Hb_001646_030 Hb_001646_030 Hb_002259_120--Hb_001646_030 Hb_000739_010 Hb_000739_010 Hb_002259_120--Hb_000739_010 Hb_002259_120--Hb_000130_340 Hb_002259_120--Hb_012675_040 Hb_167188_020 Hb_167188_020 Hb_002259_120--Hb_167188_020 Hb_001300_190 Hb_001300_190 Hb_002259_120--Hb_001300_190 Hb_007853_030 Hb_007853_030 Hb_001166_010--Hb_007853_030 Hb_001166_010--Hb_031377_010 Hb_019053_040 Hb_019053_040 Hb_001166_010--Hb_019053_040 Hb_012675_040--Hb_000739_010 Hb_012675_040--Hb_167188_020 Hb_012675_040--Hb_001646_030 Hb_012807_040 Hb_012807_040 Hb_012675_040--Hb_012807_040 Hb_012675_040--Hb_001300_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0408414 0.969663 95.5254 34.0614 0 0.147901
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0442655 44.0253

CAGE analysis