Hb_007681_010

Information

Type -
Description -
Location Contig7681: 12006-12452
Sequence    

Annotation

kegg
ID rcu:RCOM_2128750
description hypothetical protein
nr
ID XP_002537254.1
description hypothetical protein RCOM_2128750 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9TG85
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_2128750 PE=4 SV=1
Gene Ontology
ID GO:0016020
description cellulose synthase-like protein g3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007681_010 0.0 - - hypothetical protein RCOM_2128750 [Ricinus communis]
2 Hb_007853_030 0.0444093118 - - structural molecule, putative [Ricinus communis]
3 Hb_001789_220 0.0551094078 - - PREDICTED: BAHD acyltransferase DCR-like [Jatropha curcas]
4 Hb_041433_010 0.0599490467 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
5 Hb_001166_010 0.0610898256 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
6 Hb_002044_100 0.0630296354 - - PREDICTED: uncharacterized protein LOC105643555 [Jatropha curcas]
7 Hb_000144_130 0.0644257306 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000069_440 0.066613017 - - PREDICTED: uncharacterized protein LOC105642861 [Jatropha curcas]
9 Hb_000510_250 0.0673103004 transcription factor TF Family: AUX/IAA auxin-induced protein aux28 [Populus trichocarpa]
10 Hb_000069_220 0.0687703202 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF023 [Jatropha curcas]
11 Hb_001206_110 0.0689060607 - - PREDICTED: GDSL esterase/lipase At5g45910 [Jatropha curcas]
12 Hb_001253_050 0.0714741071 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
13 Hb_012807_040 0.0747367441 - - hypothetical protein POPTR_0009s01390g [Populus trichocarpa]
14 Hb_002042_090 0.0756060839 - - PREDICTED: root phototropism protein 3-like [Jatropha curcas]
15 Hb_008173_160 0.0758949537 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
16 Hb_088689_010 0.0758999094 - - PREDICTED: uncharacterized protein LOC105641027 [Jatropha curcas]
17 Hb_002973_100 0.0759477016 transcription factor TF Family: GNAT PREDICTED: probable N-acetyltransferase HLS1 [Populus euphratica]
18 Hb_009476_030 0.0760224211 - - fatty acid desaturase [Manihot esculenta]
19 Hb_031377_010 0.0764220946 transcription factor TF Family: C2C2-YABBY unknown [Populus trichocarpa]
20 Hb_004411_010 0.0765759855 - - PREDICTED: NADP-dependent alkenal double bond reductase P2-like isoform X5 [Gossypium raimondii]

Gene co-expression network

sample Hb_007681_010 Hb_007681_010 Hb_007853_030 Hb_007853_030 Hb_007681_010--Hb_007853_030 Hb_001789_220 Hb_001789_220 Hb_007681_010--Hb_001789_220 Hb_041433_010 Hb_041433_010 Hb_007681_010--Hb_041433_010 Hb_001166_010 Hb_001166_010 Hb_007681_010--Hb_001166_010 Hb_002044_100 Hb_002044_100 Hb_007681_010--Hb_002044_100 Hb_000144_130 Hb_000144_130 Hb_007681_010--Hb_000144_130 Hb_007853_030--Hb_001166_010 Hb_000069_220 Hb_000069_220 Hb_007853_030--Hb_000069_220 Hb_002042_090 Hb_002042_090 Hb_007853_030--Hb_002042_090 Hb_000069_440 Hb_000069_440 Hb_007853_030--Hb_000069_440 Hb_000172_660 Hb_000172_660 Hb_007853_030--Hb_000172_660 Hb_001205_140 Hb_001205_140 Hb_001789_220--Hb_001205_140 Hb_001789_220--Hb_041433_010 Hb_006117_030 Hb_006117_030 Hb_001789_220--Hb_006117_030 Hb_001789_220--Hb_002042_090 Hb_005345_020 Hb_005345_020 Hb_001789_220--Hb_005345_020 Hb_041433_010--Hb_005345_020 Hb_001571_100 Hb_001571_100 Hb_041433_010--Hb_001571_100 Hb_009476_030 Hb_009476_030 Hb_041433_010--Hb_009476_030 Hb_000608_270 Hb_000608_270 Hb_041433_010--Hb_000608_270 Hb_001166_010--Hb_000144_130 Hb_001166_010--Hb_002044_100 Hb_031377_010 Hb_031377_010 Hb_001166_010--Hb_031377_010 Hb_000510_250 Hb_000510_250 Hb_001166_010--Hb_000510_250 Hb_019053_040 Hb_019053_040 Hb_001166_010--Hb_019053_040 Hb_002044_100--Hb_000144_130 Hb_002044_100--Hb_000510_250 Hb_002044_100--Hb_031377_010 Hb_011930_190 Hb_011930_190 Hb_002044_100--Hb_011930_190 Hb_000144_130--Hb_000510_250 Hb_000144_130--Hb_031377_010 Hb_001671_070 Hb_001671_070 Hb_000144_130--Hb_001671_070 Hb_000130_340 Hb_000130_340 Hb_000144_130--Hb_000130_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0722924 3.30506 1.28847 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 2.08773

CAGE analysis