Hb_000608_270

Information

Type -
Description -
Location Contig608: 129888-132312
Sequence    

Annotation

kegg
ID rcu:RCOM_1077930
description hypothetical protein
nr
ID XP_002514832.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RM63
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1077930 PE=4 SV=1
Gene Ontology
ID GO:0009507
description at1g65230-like partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50848: 129910-132186 , PASA_asmbl_50849: 129908-132313 , PASA_asmbl_50850: 129928-132186
cDNA
(Sanger)
(ID:Location)		 014_H03.ab1: 129908-131507 , 021_A11.ab1: 129910-131014 , 025_C15.ab1: 129915-131514

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000608_270 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_041433_010 0.0568129171 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
3 Hb_001975_120 0.0610474361 - - chlorophyll a/b binding protein type II [Glycine max]
4 Hb_009476_030 0.0632158797 - - fatty acid desaturase [Manihot esculenta]
5 Hb_000069_440 0.0657435677 - - PREDICTED: uncharacterized protein LOC105642861 [Jatropha curcas]
6 Hb_034235_010 0.067182751 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
7 Hb_001266_010 0.0679791202 - - PREDICTED: uncharacterized protein LOC101206474 [Cucumis sativus]
8 Hb_001571_100 0.069097323 - - chlorophyll A-B binding family protein [Populus trichocarpa]
9 Hb_005345_020 0.0711967682 - - Root phototropism protein, putative [Ricinus communis]
10 Hb_149644_030 0.0722378984 - - hypothetical protein POPTR_0005s18750g [Populus trichocarpa]
11 Hb_001488_230 0.0725892983 - - PREDICTED: serine carboxypeptidase-like 25 isoform X2 [Populus euphratica]
12 Hb_017434_040 0.0726384268 - - PREDICTED: uncharacterized oxidoreductase At4g09670-like [Jatropha curcas]
13 Hb_002272_210 0.0747602838 - - PREDICTED: UPF0603 protein At1g54780, chloroplastic [Jatropha curcas]
14 Hb_003623_080 0.0751399461 - - PREDICTED: pheophytinase, chloroplastic [Populus euphratica]
15 Hb_000530_040 0.0753731847 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG2 isoform X1 [Jatropha curcas]
16 Hb_001343_030 0.0758914771 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit N, chloroplastic [Jatropha curcas]
17 Hb_002028_020 0.0761305843 - - acyltransferase, putative [Ricinus communis]
18 Hb_000697_030 0.0769972184 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like [Pyrus x bretschneideri]
19 Hb_003038_230 0.0784473646 - - PREDICTED: mannan endo-1,4-beta-mannosidase 7 [Jatropha curcas]
20 Hb_000042_280 0.0800812583 - - chlorophyll A/B binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000608_270 Hb_000608_270 Hb_041433_010 Hb_041433_010 Hb_000608_270--Hb_041433_010 Hb_001975_120 Hb_001975_120 Hb_000608_270--Hb_001975_120 Hb_009476_030 Hb_009476_030 Hb_000608_270--Hb_009476_030 Hb_000069_440 Hb_000069_440 Hb_000608_270--Hb_000069_440 Hb_034235_010 Hb_034235_010 Hb_000608_270--Hb_034235_010 Hb_001266_010 Hb_001266_010 Hb_000608_270--Hb_001266_010 Hb_005345_020 Hb_005345_020 Hb_041433_010--Hb_005345_020 Hb_001789_220 Hb_001789_220 Hb_041433_010--Hb_001789_220 Hb_001571_100 Hb_001571_100 Hb_041433_010--Hb_001571_100 Hb_041433_010--Hb_009476_030 Hb_007681_010 Hb_007681_010 Hb_041433_010--Hb_007681_010 Hb_000530_040 Hb_000530_040 Hb_001975_120--Hb_000530_040 Hb_000697_030 Hb_000697_030 Hb_001975_120--Hb_000697_030 Hb_001975_120--Hb_005345_020 Hb_003573_030 Hb_003573_030 Hb_001975_120--Hb_003573_030 Hb_001975_120--Hb_009476_030 Hb_001424_010 Hb_001424_010 Hb_001975_120--Hb_001424_010 Hb_009476_030--Hb_005345_020 Hb_002042_090 Hb_002042_090 Hb_009476_030--Hb_002042_090 Hb_001675_090 Hb_001675_090 Hb_009476_030--Hb_001675_090 Hb_009476_030--Hb_001789_220 Hb_004411_010 Hb_004411_010 Hb_000069_440--Hb_004411_010 Hb_000282_020 Hb_000282_020 Hb_000069_440--Hb_000282_020 Hb_007853_030 Hb_007853_030 Hb_000069_440--Hb_007853_030 Hb_023827_030 Hb_023827_030 Hb_000069_440--Hb_023827_030 Hb_000069_220 Hb_000069_220 Hb_000069_440--Hb_000069_220 Hb_000069_440--Hb_001266_010 Hb_149644_030 Hb_149644_030 Hb_034235_010--Hb_149644_030 Hb_034235_010--Hb_001266_010 Hb_034235_010--Hb_041433_010 Hb_034235_010--Hb_009476_030 Hb_002704_060 Hb_002704_060 Hb_034235_010--Hb_002704_060 Hb_000152_350 Hb_000152_350 Hb_034235_010--Hb_000152_350 Hb_000005_060 Hb_000005_060 Hb_001266_010--Hb_000005_060 Hb_011013_040 Hb_011013_040 Hb_001266_010--Hb_011013_040 Hb_001266_010--Hb_001975_120 Hb_001266_010--Hb_009476_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.129266 4.49645 80.7284 37.7905 0.0484896 0.0359837
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.236353 0.154935 0.057716 0.161297 73.2067

CAGE analysis