Hb_009476_030

Information

Type -
Description -
Location Contig9476: 22218-25221
Sequence    

Annotation

kegg
ID rcu:RCOM_0838160
description Omega-3 fatty acid desaturase, chloroplast precursor (EC:1.14.99.33)
nr
ID AGC51776.1
description fatty acid desaturase [Manihot esculenta]
swissprot
ID P48619
description Omega-3 fatty acid desaturase, chloroplastic OS=Ricinus communis GN=FAD7A-1 PE=2 SV=1
trembl
ID V9M596
description Fatty acid desaturase OS=Manihot esculenta GN=FAD7 PE=2 SV=1
Gene Ontology
ID GO:0031969
description omega-3 fatty acid chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63278: 22357-25119 , PASA_asmbl_63279: 22355-25070
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009476_030 0.0 - - fatty acid desaturase [Manihot esculenta]
2 Hb_005345_020 0.0364890118 - - Root phototropism protein, putative [Ricinus communis]
3 Hb_002042_090 0.0459972379 - - PREDICTED: root phototropism protein 3-like [Jatropha curcas]
4 Hb_001975_120 0.0519288421 - - chlorophyll a/b binding protein type II [Glycine max]
5 Hb_001675_090 0.0523591536 - - Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]
6 Hb_041433_010 0.0535029873 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
7 Hb_001789_220 0.0583977427 - - PREDICTED: BAHD acyltransferase DCR-like [Jatropha curcas]
8 Hb_007853_030 0.0627656224 - - structural molecule, putative [Ricinus communis]
9 Hb_000608_270 0.0632158797 - - conserved hypothetical protein [Ricinus communis]
10 Hb_034235_010 0.0650482643 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
11 Hb_000069_220 0.0653687445 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF023 [Jatropha curcas]
12 Hb_001266_010 0.0657309069 - - PREDICTED: uncharacterized protein LOC101206474 [Cucumis sativus]
13 Hb_000069_440 0.0678053407 - - PREDICTED: uncharacterized protein LOC105642861 [Jatropha curcas]
14 Hb_000210_030 0.0687817825 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP6 [Jatropha curcas]
15 Hb_001571_100 0.0696219604 - - chlorophyll A-B binding family protein [Populus trichocarpa]
16 Hb_001205_140 0.0705208483 - - PREDICTED: cytochrome P450 90B1 [Jatropha curcas]
17 Hb_003573_030 0.0733704451 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
18 Hb_000530_040 0.0743718416 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG2 isoform X1 [Jatropha curcas]
19 Hb_001343_030 0.0759028113 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit N, chloroplastic [Jatropha curcas]
20 Hb_007681_010 0.0760224211 - - hypothetical protein RCOM_2128750 [Ricinus communis]

Gene co-expression network

sample Hb_009476_030 Hb_009476_030 Hb_005345_020 Hb_005345_020 Hb_009476_030--Hb_005345_020 Hb_002042_090 Hb_002042_090 Hb_009476_030--Hb_002042_090 Hb_001975_120 Hb_001975_120 Hb_009476_030--Hb_001975_120 Hb_001675_090 Hb_001675_090 Hb_009476_030--Hb_001675_090 Hb_041433_010 Hb_041433_010 Hb_009476_030--Hb_041433_010 Hb_001789_220 Hb_001789_220 Hb_009476_030--Hb_001789_220 Hb_005345_020--Hb_001675_090 Hb_005345_020--Hb_041433_010 Hb_001571_100 Hb_001571_100 Hb_005345_020--Hb_001571_100 Hb_005345_020--Hb_001975_120 Hb_005345_020--Hb_001789_220 Hb_002042_090--Hb_001789_220 Hb_001205_140 Hb_001205_140 Hb_002042_090--Hb_001205_140 Hb_007853_030 Hb_007853_030 Hb_002042_090--Hb_007853_030 Hb_002042_090--Hb_005345_020 Hb_000210_030 Hb_000210_030 Hb_002042_090--Hb_000210_030 Hb_000530_040 Hb_000530_040 Hb_001975_120--Hb_000530_040 Hb_000697_030 Hb_000697_030 Hb_001975_120--Hb_000697_030 Hb_003573_030 Hb_003573_030 Hb_001975_120--Hb_003573_030 Hb_001424_010 Hb_001424_010 Hb_001975_120--Hb_001424_010 Hb_000719_030 Hb_000719_030 Hb_001675_090--Hb_000719_030 Hb_002818_110 Hb_002818_110 Hb_001675_090--Hb_002818_110 Hb_001675_090--Hb_000210_030 Hb_000061_010 Hb_000061_010 Hb_001675_090--Hb_000061_010 Hb_041433_010--Hb_001789_220 Hb_041433_010--Hb_001571_100 Hb_000608_270 Hb_000608_270 Hb_041433_010--Hb_000608_270 Hb_007681_010 Hb_007681_010 Hb_041433_010--Hb_007681_010 Hb_001789_220--Hb_001205_140 Hb_006117_030 Hb_006117_030 Hb_001789_220--Hb_006117_030 Hb_001789_220--Hb_007681_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.08052 5.61067 178.796 64.4559 0.0367956 0.0794706
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0863004 0.101857 0.0644533 1.85661 142.095

CAGE analysis