Hb_041433_010

Information

Type transcription factor
Description TF Family: G2-like
Location Contig41433: 13160-16241
Sequence    

Annotation

kegg
ID rcu:RCOM_1172200
description DNA binding protein, putative
nr
ID XP_002517855.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q9SIV3
description Transcription activator GLK1 OS=Arabidopsis thaliana GN=GLK1 PE=2 SV=2
trembl
ID B9RVT6
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_1172200 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription activator glk1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41078: 13089-16291 , PASA_asmbl_41079: 15252-16291
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_041433_010 0.0 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
2 Hb_005345_020 0.0425068718 - - Root phototropism protein, putative [Ricinus communis]
3 Hb_001789_220 0.0472083821 - - PREDICTED: BAHD acyltransferase DCR-like [Jatropha curcas]
4 Hb_001571_100 0.0480202789 - - chlorophyll A-B binding family protein [Populus trichocarpa]
5 Hb_009476_030 0.0535029873 - - fatty acid desaturase [Manihot esculenta]
6 Hb_000608_270 0.0568129171 - - conserved hypothetical protein [Ricinus communis]
7 Hb_007681_010 0.0599490467 - - hypothetical protein RCOM_2128750 [Ricinus communis]
8 Hb_000557_070 0.0604364192 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
9 Hb_006117_030 0.063328613 - - conserved hypothetical protein [Ricinus communis]
10 Hb_034235_010 0.0642924279 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
11 Hb_002043_020 0.0652363336 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH87 [Jatropha curcas]
12 Hb_149644_030 0.0664414608 - - hypothetical protein POPTR_0005s18750g [Populus trichocarpa]
13 Hb_001206_110 0.0669588493 - - PREDICTED: GDSL esterase/lipase At5g45910 [Jatropha curcas]
14 Hb_004724_090 0.0670395812 - - PREDICTED: uncharacterized protein LOC105638638 [Jatropha curcas]
15 Hb_002743_010 0.0674183446 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001205_140 0.0684612479 - - PREDICTED: cytochrome P450 90B1 [Jatropha curcas]
17 Hb_001675_090 0.0692434154 - - Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]
18 Hb_001975_120 0.0696521633 - - chlorophyll a/b binding protein type II [Glycine max]
19 Hb_000069_220 0.0704425208 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF023 [Jatropha curcas]
20 Hb_000915_210 0.0717518649 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_041433_010 Hb_041433_010 Hb_005345_020 Hb_005345_020 Hb_041433_010--Hb_005345_020 Hb_001789_220 Hb_001789_220 Hb_041433_010--Hb_001789_220 Hb_001571_100 Hb_001571_100 Hb_041433_010--Hb_001571_100 Hb_009476_030 Hb_009476_030 Hb_041433_010--Hb_009476_030 Hb_000608_270 Hb_000608_270 Hb_041433_010--Hb_000608_270 Hb_007681_010 Hb_007681_010 Hb_041433_010--Hb_007681_010 Hb_005345_020--Hb_009476_030 Hb_001675_090 Hb_001675_090 Hb_005345_020--Hb_001675_090 Hb_005345_020--Hb_001571_100 Hb_001975_120 Hb_001975_120 Hb_005345_020--Hb_001975_120 Hb_005345_020--Hb_001789_220 Hb_001205_140 Hb_001205_140 Hb_001789_220--Hb_001205_140 Hb_006117_030 Hb_006117_030 Hb_001789_220--Hb_006117_030 Hb_002042_090 Hb_002042_090 Hb_001789_220--Hb_002042_090 Hb_001789_220--Hb_007681_010 Hb_002743_010 Hb_002743_010 Hb_001571_100--Hb_002743_010 Hb_002028_020 Hb_002028_020 Hb_001571_100--Hb_002028_020 Hb_000333_010 Hb_000333_010 Hb_001571_100--Hb_000333_010 Hb_000557_070 Hb_000557_070 Hb_001571_100--Hb_000557_070 Hb_009476_030--Hb_002042_090 Hb_009476_030--Hb_001975_120 Hb_009476_030--Hb_001675_090 Hb_009476_030--Hb_001789_220 Hb_000608_270--Hb_001975_120 Hb_000608_270--Hb_009476_030 Hb_000069_440 Hb_000069_440 Hb_000608_270--Hb_000069_440 Hb_034235_010 Hb_034235_010 Hb_000608_270--Hb_034235_010 Hb_001266_010 Hb_001266_010 Hb_000608_270--Hb_001266_010 Hb_007853_030 Hb_007853_030 Hb_007681_010--Hb_007853_030 Hb_001166_010 Hb_001166_010 Hb_007681_010--Hb_001166_010 Hb_002044_100 Hb_002044_100 Hb_007681_010--Hb_002044_100 Hb_000144_130 Hb_000144_130 Hb_007681_010--Hb_000144_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.73169 27.2747 12.1128 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0464386 23.3272

CAGE analysis