Hb_000333_010

Information

Type -
Description -
Location Contig333: 13810-14532
Sequence    

Annotation

kegg
ID pop:POPTR_0006s14510g
description hypothetical protein
nr
ID XP_006381632.1
description hypothetical protein POPTR_0006s14510g [Populus trichocarpa]
swissprot
ID O04011
description Auxin-binding protein ABP20 OS=Prunus persica GN=ABP20 PE=2 SV=1
trembl
ID U5GAZ1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s14510g PE=4 SV=1
Gene Ontology
ID GO:0005634
description auxin-binding protein abp19a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34917: 13612-14858
cDNA
(Sanger)
(ID:Location)		 002_F18.ab1: 13869-14628 , 003_H03.ab1: 13864-14632 , 003_L03.ab1: 13866-14635 , 005_A07.ab1: 13869-14642 , 005_F19.ab1: 13869-14636 , 006_A18.ab1: 13869-14583 , 006_C19.ab1: 13612-14287 , 007_N16.ab1: 13869-14606 , 009_C14.ab1: 13882-14549 , 009_F20.ab1: 13873-14597 , 012_B10.ab1: 13869-14586 , 012_E07.ab1: 13869-14649 , 012_E22.ab1: 13881-14611 , 013_B01.ab1: 13866-14625 , 014_A19.ab1: 13863-14470 , 014_D24.ab1: 13612-14275 , 014_I19.ab1: 13866-14576 , 015_H03.ab1: 13866-14538 , 015_N13.ab1: 13869-14556 , 015_P21.ab1: 13866-14560 , 017_L19.ab1: 13866-14390 , 017_L22.ab1: 13873-14508 , 018_G20.ab1: 13866-14506 , 019_A16.ab1: 13879-14603 , 020_A10.ab1: 13869-14647 , 020_C15.ab1: 13866-14626 , 020_M14.ab1: 13866-14619 , 021_D01.ab1: 13866-14644 , 021_E24.ab1: 13874-14645 , 021_K04.ab1: 13864-14630 , 021_O12.ab1: 13869-14453 , 022_B23.ab1: 13866-14518 , 022_C08.ab1: 13866-14060 , 022_G22.ab1: 13872-14602 , 022_N09.ab1: 13869-14303 , 023_A20.ab1: 13866-14540 , 023_F13.ab1: 13874-14557 , 024_I14.ab1: 13869-14457 , 026_I08.ab1: 13866-14551 , 027_C09.ab1: 13869-14203 , 027_I05.ab1: 13873-14105 , 027_L12.ab1: 13873-14496 , 027_N14.ab1: 13866-14508 , 028_F15.ab1: 13866-14496 , 028_K19.ab1: 13866-14344 , 029_I15.ab1: 13866-14122 , 030_J23.ab1: 13869-14588 , 031_M23.ab1: 13873-14622 , 032_B03.ab1: 13866-14382 , 032_P06.ab1: 14181-14796 , 032_P21.ab1: 13874-14531 , 033_I04.ab1: 13869-14641 , 033_K16.ab1: 13881-14581 , 034_A14.ab1: 13866-14631 , 034_H02.ab1: 13873-14635 , 035_K19.ab1: 13866-14468 , 037_D01.ab1: 13869-14651 , 037_F12.ab1: 13879-14661 , 037_H12.ab1: 13879-14730 , 038_B12.ab1: 13862-14636 , 038_K02.ab1: 13866-14645 , 039_E09.ab1: 13873-14564 , 041_C18.ab1: 13869-14604 , 041_J03.ab1: 13867-14399 , 041_J16.ab1: 13869-14625 , 041_O04.ab1: 13872-14547 , 042_C18.ab1: 13879-14560 , 043_I11.ab1: 13869-14555 , 043_O10.ab1: 13866-14564 , 045_F15.ab1: 13869-14642 , 045_P03.ab1: 13866-14610 , 046_E15.ab1: 13869-14541 , 046_G24.ab1: 13873-14617 , 046_L16.ab1: 13869-14611 , 047_J01.ab1: 13873-14619 , 048_C18.ab1: 13879-14648 , 048_J04.ab1: 13879-14587 , 048_J08.ab1: 13866-14628 , 048_K20.ab1: 13869-14640 , 050_A01.ab1: 13866-14562 , 050_N17.ab1: 13869-14517 , 052_K17.ab1: 13869-14651 , 052_P24.ab1: 13866-14508 , 053_F21.ab1: 13869-14665 , 053_P21.ab1: 13872-14609

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000333_010 0.0 - - hypothetical protein POPTR_0006s14510g [Populus trichocarpa]
2 Hb_000512_120 0.0310463466 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor NGA1-like [Jatropha curcas]
3 Hb_001571_100 0.0479591225 - - chlorophyll A-B binding family protein [Populus trichocarpa]
4 Hb_002743_010 0.0490649145 - - conserved hypothetical protein [Ricinus communis]
5 Hb_014056_020 0.0494523598 - - zinc finger protein, putative [Ricinus communis]
6 Hb_000557_070 0.0511737186 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
7 Hb_000731_150 0.0536363815 - - PREDICTED: cytochrome P450 77A1 [Jatropha curcas]
8 Hb_000915_210 0.0554627124 - - conserved hypothetical protein [Ricinus communis]
9 Hb_006117_030 0.0563909406 - - conserved hypothetical protein [Ricinus communis]
10 Hb_007187_010 0.058832454 - - hypothetical protein JCGZ_09061 [Jatropha curcas]
11 Hb_011382_010 0.0599622762 - - hypothetical protein CICLE_v10028106mg [Citrus clementina]
12 Hb_001205_220 0.0601813622 - - conserved hypothetical protein [Ricinus communis]
13 Hb_068580_010 0.0608590453 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 isoform X2 [Populus euphratica]
14 Hb_001519_140 0.0626253175 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Vitis vinifera]
15 Hb_002328_080 0.0632457635 - - short-chain dehydrogenase, putative [Ricinus communis]
16 Hb_009707_020 0.0642404525 - - PREDICTED: 3-ketoacyl-CoA synthase 12 [Jatropha curcas]
17 Hb_000010_160 0.0650591635 - - Uncharacterized protein TCM_014508 [Theobroma cacao]
18 Hb_004993_020 0.0653313695 - - PREDICTED: putative ribonuclease H protein At1g65750 [Beta vulgaris subsp. vulgaris]
19 Hb_004724_090 0.0667280746 - - PREDICTED: uncharacterized protein LOC105638638 [Jatropha curcas]
20 Hb_002965_170 0.0667367167 transcription factor TF Family: MYB PREDICTED: myb-related protein P [Jatropha curcas]

Gene co-expression network

sample Hb_000333_010 Hb_000333_010 Hb_000512_120 Hb_000512_120 Hb_000333_010--Hb_000512_120 Hb_001571_100 Hb_001571_100 Hb_000333_010--Hb_001571_100 Hb_002743_010 Hb_002743_010 Hb_000333_010--Hb_002743_010 Hb_014056_020 Hb_014056_020 Hb_000333_010--Hb_014056_020 Hb_000557_070 Hb_000557_070 Hb_000333_010--Hb_000557_070 Hb_000731_150 Hb_000731_150 Hb_000333_010--Hb_000731_150 Hb_007187_010 Hb_007187_010 Hb_000512_120--Hb_007187_010 Hb_011382_010 Hb_011382_010 Hb_000512_120--Hb_011382_010 Hb_009707_020 Hb_009707_020 Hb_000512_120--Hb_009707_020 Hb_000512_120--Hb_014056_020 Hb_000512_120--Hb_002743_010 Hb_001571_100--Hb_002743_010 Hb_002028_020 Hb_002028_020 Hb_001571_100--Hb_002028_020 Hb_005345_020 Hb_005345_020 Hb_001571_100--Hb_005345_020 Hb_041433_010 Hb_041433_010 Hb_001571_100--Hb_041433_010 Hb_001571_100--Hb_000557_070 Hb_002743_010--Hb_014056_020 Hb_000915_210 Hb_000915_210 Hb_002743_010--Hb_000915_210 Hb_001135_310 Hb_001135_310 Hb_002743_010--Hb_001135_310 Hb_002743_010--Hb_000731_150 Hb_002965_170 Hb_002965_170 Hb_014056_020--Hb_002965_170 Hb_006117_030 Hb_006117_030 Hb_014056_020--Hb_006117_030 Hb_014056_020--Hb_000915_210 Hb_001519_140 Hb_001519_140 Hb_014056_020--Hb_001519_140 Hb_001205_220 Hb_001205_220 Hb_014056_020--Hb_001205_220 Hb_004724_090 Hb_004724_090 Hb_000557_070--Hb_004724_090 Hb_000557_070--Hb_006117_030 Hb_004993_020 Hb_004993_020 Hb_000557_070--Hb_004993_020 Hb_068580_010 Hb_068580_010 Hb_000557_070--Hb_068580_010 Hb_000557_070--Hb_000731_150 Hb_000557_070--Hb_002743_010 Hb_000731_150--Hb_001205_220 Hb_000731_150--Hb_004993_020 Hb_000731_150--Hb_001519_140 Hb_000731_150--Hb_068580_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.36492 486.953 234.712 0 0.0860566
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 5.83247 571.466

CAGE analysis