Hb_002028_020

Information

Type -
Description -
Location Contig2028: 47094-50867
Sequence    

Annotation

kegg
ID rcu:RCOM_0708020
description acyltransferase, putative
nr
ID XP_002516167.1
description acyltransferase, putative [Ricinus communis]
swissprot
ID Q570B4
description 3-ketoacyl-CoA synthase 10 OS=Arabidopsis thaliana GN=FDH PE=1 SV=2
trembl
ID B9RQZ8
description 3-ketoacyl-CoA synthase OS=Ricinus communis GN=RCOM_0708020 PE=3 SV=1
Gene Ontology
ID GO:0005783
description 3-ketoacyl- synthase 10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20742: 47133-50910 , PASA_asmbl_20743: 50486-51658
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002028_020 0.0 - - acyltransferase, putative [Ricinus communis]
2 Hb_001488_230 0.029221489 - - PREDICTED: serine carboxypeptidase-like 25 isoform X2 [Populus euphratica]
3 Hb_009588_010 0.030168526 - - sigma factor sigb regulation protein rsbq, putative [Ricinus communis]
4 Hb_000418_130 0.0387270368 - - PREDICTED: photosystem I reaction center subunit psaK, chloroplastic [Jatropha curcas]
5 Hb_001571_100 0.04484509 - - chlorophyll A-B binding family protein [Populus trichocarpa]
6 Hb_000042_280 0.046859861 - - chlorophyll A/B binding protein, putative [Ricinus communis]
7 Hb_149644_030 0.0511995611 - - hypothetical protein POPTR_0005s18750g [Populus trichocarpa]
8 Hb_004032_400 0.053879282 - - PREDICTED: uncharacterized transporter YBR287W-like [Jatropha curcas]
9 Hb_000557_070 0.0637566245 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
10 Hb_007537_040 0.0650704084 - - PREDICTED: uncharacterized protein LOC105803495 [Gossypium raimondii]
11 Hb_002752_020 0.0685604671 - - FKBP-type peptidyl-prolyl cis-trans isomerase 3 family protein [Populus trichocarpa]
12 Hb_000333_010 0.0690774901 - - hypothetical protein POPTR_0006s14510g [Populus trichocarpa]
13 Hb_008225_050 0.0697455476 - - hypothetical protein PRUPE_ppa004332mg [Prunus persica]
14 Hb_003734_070 0.0704636927 - - chlorophyll A/B binding protein, putative [Ricinus communis]
15 Hb_068580_010 0.0717767354 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 isoform X2 [Populus euphratica]
16 Hb_002743_010 0.0718111496 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003623_080 0.072171971 - - PREDICTED: pheophytinase, chloroplastic [Populus euphratica]
18 Hb_041433_010 0.0726877043 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
19 Hb_002078_330 0.0728745808 - - lipid binding protein, putative [Ricinus communis]
20 Hb_146255_030 0.0739997499 transcription factor TF Family: bZIP PREDICTED: transcription factor HY5-like [Jatropha curcas]

Gene co-expression network

sample Hb_002028_020 Hb_002028_020 Hb_001488_230 Hb_001488_230 Hb_002028_020--Hb_001488_230 Hb_009588_010 Hb_009588_010 Hb_002028_020--Hb_009588_010 Hb_000418_130 Hb_000418_130 Hb_002028_020--Hb_000418_130 Hb_001571_100 Hb_001571_100 Hb_002028_020--Hb_001571_100 Hb_000042_280 Hb_000042_280 Hb_002028_020--Hb_000042_280 Hb_149644_030 Hb_149644_030 Hb_002028_020--Hb_149644_030 Hb_001488_230--Hb_000042_280 Hb_001488_230--Hb_009588_010 Hb_001488_230--Hb_000418_130 Hb_001488_230--Hb_149644_030 Hb_004032_400 Hb_004032_400 Hb_001488_230--Hb_004032_400 Hb_009588_010--Hb_000418_130 Hb_009588_010--Hb_004032_400 Hb_009588_010--Hb_000042_280 Hb_003734_070 Hb_003734_070 Hb_009588_010--Hb_003734_070 Hb_000418_130--Hb_000042_280 Hb_000418_130--Hb_004032_400 Hb_002752_020 Hb_002752_020 Hb_000418_130--Hb_002752_020 Hb_002743_010 Hb_002743_010 Hb_001571_100--Hb_002743_010 Hb_005345_020 Hb_005345_020 Hb_001571_100--Hb_005345_020 Hb_000333_010 Hb_000333_010 Hb_001571_100--Hb_000333_010 Hb_041433_010 Hb_041433_010 Hb_001571_100--Hb_041433_010 Hb_000557_070 Hb_000557_070 Hb_001571_100--Hb_000557_070 Hb_012098_100 Hb_012098_100 Hb_000042_280--Hb_012098_100 Hb_000042_280--Hb_149644_030 Hb_034235_010 Hb_034235_010 Hb_149644_030--Hb_034235_010 Hb_149644_030--Hb_001571_100 Hb_149644_030--Hb_009588_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.941218 25.2182 15.3813 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0234124 0 0 0.12463 30.6861

CAGE analysis