Hb_001488_230

Information

Type -
Description -
Location Contig1488: 154011-157897
Sequence    

Annotation

kegg
ID rcu:RCOM_1025080
description serine carboxypeptidase, putative (EC:3.4.16.6)
nr
ID XP_011009402.1
description PREDICTED: serine carboxypeptidase-like 25 isoform X2 [Populus euphratica]
swissprot
ID Q8L9Y0
description Serine carboxypeptidase-like 25 OS=Arabidopsis thaliana GN=SCPL25 PE=2 SV=2
trembl
ID A0A061EFM1
description Carboxypeptidase OS=Theobroma cacao GN=TCM_018765 PE=3 SV=1
Gene Ontology
ID GO:0004185
description serine carboxypeptidase-like 25

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12320: 153832-157643
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001488_230 0.0 - - PREDICTED: serine carboxypeptidase-like 25 isoform X2 [Populus euphratica]
2 Hb_002028_020 0.029221489 - - acyltransferase, putative [Ricinus communis]
3 Hb_000042_280 0.0316274956 - - chlorophyll A/B binding protein, putative [Ricinus communis]
4 Hb_009588_010 0.0367163109 - - sigma factor sigb regulation protein rsbq, putative [Ricinus communis]
5 Hb_000418_130 0.0408165954 - - PREDICTED: photosystem I reaction center subunit psaK, chloroplastic [Jatropha curcas]
6 Hb_149644_030 0.0559896544 - - hypothetical protein POPTR_0005s18750g [Populus trichocarpa]
7 Hb_004032_400 0.0599427083 - - PREDICTED: uncharacterized transporter YBR287W-like [Jatropha curcas]
8 Hb_001571_100 0.0604436906 - - chlorophyll A-B binding family protein [Populus trichocarpa]
9 Hb_012098_100 0.0612438602 - - zinc finger protein, putative [Ricinus communis]
10 Hb_003623_080 0.0695798245 - - PREDICTED: pheophytinase, chloroplastic [Populus euphratica]
11 Hb_000608_270 0.0725892983 - - conserved hypothetical protein [Ricinus communis]
12 Hb_146255_030 0.0735343582 transcription factor TF Family: bZIP PREDICTED: transcription factor HY5-like [Jatropha curcas]
13 Hb_007537_040 0.0741290535 - - PREDICTED: uncharacterized protein LOC105803495 [Gossypium raimondii]
14 Hb_041433_010 0.0752367142 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
15 Hb_008225_050 0.0753429891 - - hypothetical protein PRUPE_ppa004332mg [Prunus persica]
16 Hb_002752_020 0.0757063615 - - FKBP-type peptidyl-prolyl cis-trans isomerase 3 family protein [Populus trichocarpa]
17 Hb_000557_070 0.0772925587 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
18 Hb_001158_130 0.0826257661 - - PREDICTED: protein TAPETUM DETERMINANT 1-like [Jatropha curcas]
19 Hb_000881_020 0.0828954735 - - hypothetical protein MIMGU_mgv1a022110mg, partial [Erythranthe guttata]
20 Hb_003734_070 0.0845903081 - - chlorophyll A/B binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001488_230 Hb_001488_230 Hb_002028_020 Hb_002028_020 Hb_001488_230--Hb_002028_020 Hb_000042_280 Hb_000042_280 Hb_001488_230--Hb_000042_280 Hb_009588_010 Hb_009588_010 Hb_001488_230--Hb_009588_010 Hb_000418_130 Hb_000418_130 Hb_001488_230--Hb_000418_130 Hb_149644_030 Hb_149644_030 Hb_001488_230--Hb_149644_030 Hb_004032_400 Hb_004032_400 Hb_001488_230--Hb_004032_400 Hb_002028_020--Hb_009588_010 Hb_002028_020--Hb_000418_130 Hb_001571_100 Hb_001571_100 Hb_002028_020--Hb_001571_100 Hb_002028_020--Hb_000042_280 Hb_002028_020--Hb_149644_030 Hb_000042_280--Hb_000418_130 Hb_000042_280--Hb_009588_010 Hb_012098_100 Hb_012098_100 Hb_000042_280--Hb_012098_100 Hb_000042_280--Hb_149644_030 Hb_009588_010--Hb_000418_130 Hb_009588_010--Hb_004032_400 Hb_003734_070 Hb_003734_070 Hb_009588_010--Hb_003734_070 Hb_000418_130--Hb_004032_400 Hb_002752_020 Hb_002752_020 Hb_000418_130--Hb_002752_020 Hb_034235_010 Hb_034235_010 Hb_149644_030--Hb_034235_010 Hb_149644_030--Hb_001571_100 Hb_149644_030--Hb_009588_010 Hb_146255_030 Hb_146255_030 Hb_004032_400--Hb_146255_030 Hb_004032_400--Hb_002752_020 Hb_004837_010 Hb_004837_010 Hb_004032_400--Hb_004837_010 Hb_004032_400--Hb_002028_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.451493 8.22982 5.16549 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0125181 9.90746

CAGE analysis