Hb_004032_400

Information

Type -
Description -
Location Contig4032: 363859-366806
Sequence    

Annotation

kegg
ID pop:POPTR_0002s00530g
description POPTRDRAFT_753848; auxin efflux carrier family protein
nr
ID XP_012073557.1
description PREDICTED: uncharacterized transporter YBR287W-like [Jatropha curcas]
swissprot
ID O14197
description Uncharacterized transporter C5D6.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC5D6.04 PE=3 SV=1
trembl
ID A0A067KY45
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08025 PE=4 SV=1
Gene Ontology
ID GO:0016021
description uncharacterized transporter ybr287w-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40061: 363891-364530 , PASA_asmbl_40062: 365472-366780
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004032_400 0.0 - - PREDICTED: uncharacterized transporter YBR287W-like [Jatropha curcas]
2 Hb_146255_030 0.0306841806 transcription factor TF Family: bZIP PREDICTED: transcription factor HY5-like [Jatropha curcas]
3 Hb_000418_130 0.0405129699 - - PREDICTED: photosystem I reaction center subunit psaK, chloroplastic [Jatropha curcas]
4 Hb_002752_020 0.0431913534 - - FKBP-type peptidyl-prolyl cis-trans isomerase 3 family protein [Populus trichocarpa]
5 Hb_004837_010 0.0466888574 - - PREDICTED: aldehyde dehydrogenase family 3 member F1-like [Jatropha curcas]
6 Hb_009588_010 0.048320209 - - sigma factor sigb regulation protein rsbq, putative [Ricinus communis]
7 Hb_002028_020 0.053879282 - - acyltransferase, putative [Ricinus communis]
8 Hb_000497_050 0.0566009331 - - PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Jatropha curcas]
9 Hb_002534_020 0.057807504 - - PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Gossypium raimondii]
10 Hb_001488_230 0.0599427083 - - PREDICTED: serine carboxypeptidase-like 25 isoform X2 [Populus euphratica]
11 Hb_002328_080 0.0605101678 - - short-chain dehydrogenase, putative [Ricinus communis]
12 Hb_000179_010 0.0618515284 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
13 Hb_003734_070 0.0630011116 - - chlorophyll A/B binding protein, putative [Ricinus communis]
14 Hb_001307_050 0.064876085 - - PREDICTED: protein NRT1/ PTR FAMILY 5.2-like [Jatropha curcas]
15 Hb_004338_050 0.0666614057 - - hypothetical protein POPTR_0004s02760g [Populus trichocarpa]
16 Hb_001735_040 0.0682514886 - - PREDICTED: F-box protein SKIP2-like isoform X2 [Populus euphratica]
17 Hb_001277_350 0.0706861803 - - early light-induced protein, putative [Ricinus communis]
18 Hb_011724_040 0.0712260957 - - PREDICTED: uncharacterized protein LOC105632860 [Jatropha curcas]
19 Hb_009707_020 0.0717304632 - - PREDICTED: 3-ketoacyl-CoA synthase 12 [Jatropha curcas]
20 Hb_008225_050 0.0718019261 - - hypothetical protein PRUPE_ppa004332mg [Prunus persica]

Gene co-expression network

sample Hb_004032_400 Hb_004032_400 Hb_146255_030 Hb_146255_030 Hb_004032_400--Hb_146255_030 Hb_000418_130 Hb_000418_130 Hb_004032_400--Hb_000418_130 Hb_002752_020 Hb_002752_020 Hb_004032_400--Hb_002752_020 Hb_004837_010 Hb_004837_010 Hb_004032_400--Hb_004837_010 Hb_009588_010 Hb_009588_010 Hb_004032_400--Hb_009588_010 Hb_002028_020 Hb_002028_020 Hb_004032_400--Hb_002028_020 Hb_146255_030--Hb_002752_020 Hb_000497_050 Hb_000497_050 Hb_146255_030--Hb_000497_050 Hb_002534_020 Hb_002534_020 Hb_146255_030--Hb_002534_020 Hb_001307_050 Hb_001307_050 Hb_146255_030--Hb_001307_050 Hb_001277_350 Hb_001277_350 Hb_146255_030--Hb_001277_350 Hb_000418_130--Hb_009588_010 Hb_000418_130--Hb_002028_020 Hb_000042_280 Hb_000042_280 Hb_000418_130--Hb_000042_280 Hb_001488_230 Hb_001488_230 Hb_000418_130--Hb_001488_230 Hb_000418_130--Hb_002752_020 Hb_002752_020--Hb_000497_050 Hb_008225_050 Hb_008225_050 Hb_002752_020--Hb_008225_050 Hb_002752_020--Hb_001277_350 Hb_004338_050 Hb_004338_050 Hb_002752_020--Hb_004338_050 Hb_000179_010 Hb_000179_010 Hb_004837_010--Hb_000179_010 Hb_004837_010--Hb_001307_050 Hb_158001_010 Hb_158001_010 Hb_004837_010--Hb_158001_010 Hb_085682_010 Hb_085682_010 Hb_004837_010--Hb_085682_010 Hb_004837_010--Hb_146255_030 Hb_009588_010--Hb_002028_020 Hb_009588_010--Hb_001488_230 Hb_009588_010--Hb_000042_280 Hb_003734_070 Hb_003734_070 Hb_009588_010--Hb_003734_070 Hb_002028_020--Hb_001488_230 Hb_001571_100 Hb_001571_100 Hb_002028_020--Hb_001571_100 Hb_002028_020--Hb_000042_280 Hb_149644_030 Hb_149644_030 Hb_002028_020--Hb_149644_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.289836 8.59255 5.70701 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0107043 13.462

CAGE analysis