Hb_004338_050

Information

Type -
Description -
Location Contig4338: 64317-68320
Sequence    

Annotation

kegg
ID pop:POPTR_0004s02760g
description hypothetical protein
nr
ID XP_006383976.1
description hypothetical protein POPTR_0004s02760g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5GE08
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s02760g PE=4 SV=1
Gene Ontology
ID GO:0004674
description g-type lectin s-receptor-like serine threonine-protein kinase at1g11410

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42403: 67263-67732
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004338_050 0.0 - - hypothetical protein POPTR_0004s02760g [Populus trichocarpa]
2 Hb_000497_050 0.046903247 - - PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Jatropha curcas]
3 Hb_002752_020 0.0492917261 - - FKBP-type peptidyl-prolyl cis-trans isomerase 3 family protein [Populus trichocarpa]
4 Hb_001999_230 0.0579130182 - - PREDICTED: uncharacterized protein LOC105630678 [Jatropha curcas]
5 Hb_001307_050 0.0603104625 - - PREDICTED: protein NRT1/ PTR FAMILY 5.2-like [Jatropha curcas]
6 Hb_008225_050 0.0603179544 - - hypothetical protein PRUPE_ppa004332mg [Prunus persica]
7 Hb_146255_030 0.0604745648 transcription factor TF Family: bZIP PREDICTED: transcription factor HY5-like [Jatropha curcas]
8 Hb_000099_120 0.0637902317 - - PREDICTED: GDT1-like protein 1, chloroplastic isoform X3 [Jatropha curcas]
9 Hb_001277_350 0.0645214609 - - early light-induced protein, putative [Ricinus communis]
10 Hb_001007_070 0.0662185892 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
11 Hb_000254_130 0.0663627349 - - Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]
12 Hb_004032_400 0.0666614057 - - PREDICTED: uncharacterized transporter YBR287W-like [Jatropha curcas]
13 Hb_000392_470 0.0683260331 - - conserved hypothetical protein [Ricinus communis]
14 Hb_028491_010 0.068413821 - - hypothetical protein JCGZ_12857 [Jatropha curcas]
15 Hb_029991_010 0.0704512577 - - hypothetical protein PRUPE_ppa001615mg [Prunus persica]
16 Hb_008847_050 0.0713352309 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000418_130 0.0713929148 - - PREDICTED: photosystem I reaction center subunit psaK, chloroplastic [Jatropha curcas]
18 Hb_004607_110 0.0727053908 - - PREDICTED: serine/threonine-protein kinase Nek6 [Jatropha curcas]
19 Hb_001277_130 0.0728551096 - - PREDICTED: dentin sialophosphoprotein-like [Jatropha curcas]
20 Hb_001735_040 0.0731080568 - - PREDICTED: F-box protein SKIP2-like isoform X2 [Populus euphratica]

Gene co-expression network

sample Hb_004338_050 Hb_004338_050 Hb_000497_050 Hb_000497_050 Hb_004338_050--Hb_000497_050 Hb_002752_020 Hb_002752_020 Hb_004338_050--Hb_002752_020 Hb_001999_230 Hb_001999_230 Hb_004338_050--Hb_001999_230 Hb_001307_050 Hb_001307_050 Hb_004338_050--Hb_001307_050 Hb_008225_050 Hb_008225_050 Hb_004338_050--Hb_008225_050 Hb_146255_030 Hb_146255_030 Hb_004338_050--Hb_146255_030 Hb_000497_050--Hb_002752_020 Hb_001277_350 Hb_001277_350 Hb_000497_050--Hb_001277_350 Hb_000497_050--Hb_001307_050 Hb_000497_050--Hb_146255_030 Hb_002121_050 Hb_002121_050 Hb_000497_050--Hb_002121_050 Hb_002752_020--Hb_146255_030 Hb_004032_400 Hb_004032_400 Hb_002752_020--Hb_004032_400 Hb_002752_020--Hb_008225_050 Hb_002752_020--Hb_001277_350 Hb_001007_070 Hb_001007_070 Hb_001999_230--Hb_001007_070 Hb_000254_130 Hb_000254_130 Hb_001999_230--Hb_000254_130 Hb_000099_120 Hb_000099_120 Hb_001999_230--Hb_000099_120 Hb_001999_230--Hb_000497_050 Hb_001564_120 Hb_001564_120 Hb_001999_230--Hb_001564_120 Hb_001975_100 Hb_001975_100 Hb_001999_230--Hb_001975_100 Hb_000179_010 Hb_000179_010 Hb_001307_050--Hb_000179_010 Hb_029991_010 Hb_029991_010 Hb_001307_050--Hb_029991_010 Hb_001307_050--Hb_146255_030 Hb_004837_010 Hb_004837_010 Hb_001307_050--Hb_004837_010 Hb_007537_040 Hb_007537_040 Hb_008225_050--Hb_007537_040 Hb_008225_050--Hb_000254_130 Hb_003025_160 Hb_003025_160 Hb_008225_050--Hb_003025_160 Hb_004970_060 Hb_004970_060 Hb_008225_050--Hb_004970_060 Hb_008225_050--Hb_001975_100 Hb_146255_030--Hb_004032_400 Hb_002534_020 Hb_002534_020 Hb_146255_030--Hb_002534_020 Hb_146255_030--Hb_001277_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.139743 1.85705 1.42383 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0223575 0 0 0.0139963 3.53274

CAGE analysis