Hb_001999_230

Information

Type -
Description -
Location Contig1999: 217934-218215
Sequence    

Annotation

kegg
ID rcu:RCOM_0611510
description hypothetical protein
nr
ID XP_012067962.1
description PREDICTED: uncharacterized protein LOC105630678 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LGP2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08495 PE=4 SV=1
Gene Ontology
ID GO:0009535
description PREDICTED: uncharacterized protein LOC105630678

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20044: 217806-218416
cDNA
(Sanger)
(ID:Location)		 045_L17.ab1: 217838-218363

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001999_230 0.0 - - PREDICTED: uncharacterized protein LOC105630678 [Jatropha curcas]
2 Hb_001007_070 0.0375228363 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
3 Hb_000254_130 0.043140119 - - Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]
4 Hb_000099_120 0.0485194159 - - PREDICTED: GDT1-like protein 1, chloroplastic isoform X3 [Jatropha curcas]
5 Hb_000497_050 0.0521412154 - - PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Jatropha curcas]
6 Hb_001564_120 0.0523524502 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP26-2, chloroplastic [Populus euphratica]
7 Hb_001975_100 0.0544478322 - - chlorophyll a-b binding protein 151, chloroplastic [Jatropha curcas]
8 Hb_008225_050 0.0551546333 - - hypothetical protein PRUPE_ppa004332mg [Prunus persica]
9 Hb_005063_030 0.0559540028 - - Photosystem II reaction center W protein, chloroplast precursor, putative [Ricinus communis]
10 Hb_004338_050 0.0579130182 - - hypothetical protein POPTR_0004s02760g [Populus trichocarpa]
11 Hb_003025_160 0.0583167178 - - Protein HVA22, putative [Ricinus communis]
12 Hb_002752_020 0.0601074268 - - FKBP-type peptidyl-prolyl cis-trans isomerase 3 family protein [Populus trichocarpa]
13 Hb_009193_070 0.0612886199 - - fatty acid elongase 3-ketoacyl-CoA synthase 1 [Arabidopsis thaliana]
14 Hb_002259_090 0.0634248267 - - PREDICTED: ABC transporter G family member 11 [Jatropha curcas]
15 Hb_004970_060 0.0653230038 - - PREDICTED: uncharacterized protein LOC100259061 [Vitis vinifera]
16 Hb_008847_050 0.0671232379 - - conserved hypothetical protein [Ricinus communis]
17 Hb_131466_010 0.0686847013 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
18 Hb_005054_120 0.0688559678 - - PREDICTED: sedoheptulose-1,7-bisphosphatase, chloroplastic [Jatropha curcas]
19 Hb_153258_040 0.0699793992 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like [Jatropha curcas]
20 Hb_000392_470 0.0704346238 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001999_230 Hb_001999_230 Hb_001007_070 Hb_001007_070 Hb_001999_230--Hb_001007_070 Hb_000254_130 Hb_000254_130 Hb_001999_230--Hb_000254_130 Hb_000099_120 Hb_000099_120 Hb_001999_230--Hb_000099_120 Hb_000497_050 Hb_000497_050 Hb_001999_230--Hb_000497_050 Hb_001564_120 Hb_001564_120 Hb_001999_230--Hb_001564_120 Hb_001975_100 Hb_001975_100 Hb_001999_230--Hb_001975_100 Hb_001007_070--Hb_000099_120 Hb_005054_120 Hb_005054_120 Hb_001007_070--Hb_005054_120 Hb_002259_090 Hb_002259_090 Hb_001007_070--Hb_002259_090 Hb_009193_070 Hb_009193_070 Hb_001007_070--Hb_009193_070 Hb_001007_070--Hb_000254_130 Hb_000254_130--Hb_001975_100 Hb_008225_050 Hb_008225_050 Hb_000254_130--Hb_008225_050 Hb_003025_160 Hb_003025_160 Hb_000254_130--Hb_003025_160 Hb_005063_030 Hb_005063_030 Hb_000254_130--Hb_005063_030 Hb_002752_020 Hb_002752_020 Hb_000254_130--Hb_002752_020 Hb_000392_470 Hb_000392_470 Hb_000099_120--Hb_000392_470 Hb_000099_120--Hb_001564_120 Hb_004338_050 Hb_004338_050 Hb_000099_120--Hb_004338_050 Hb_000099_120--Hb_000254_130 Hb_000497_050--Hb_002752_020 Hb_001277_350 Hb_001277_350 Hb_000497_050--Hb_001277_350 Hb_000497_050--Hb_004338_050 Hb_001307_050 Hb_001307_050 Hb_000497_050--Hb_001307_050 Hb_146255_030 Hb_146255_030 Hb_000497_050--Hb_146255_030 Hb_002121_050 Hb_002121_050 Hb_000497_050--Hb_002121_050 Hb_001564_120--Hb_005063_030 Hb_000098_040 Hb_000098_040 Hb_001564_120--Hb_000098_040 Hb_001564_120--Hb_001975_100 Hb_001564_120--Hb_001007_070 Hb_001975_100--Hb_005063_030 Hb_001006_040 Hb_001006_040 Hb_001975_100--Hb_001006_040 Hb_001292_030 Hb_001292_030 Hb_001975_100--Hb_001292_030 Hb_001975_100--Hb_008225_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.186926 17.9644 168.068 120.42 0 0.180546
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.440015 0.694414 0 4.53218 335.948

CAGE analysis