Hb_003025_160

Information

Type -
Description -
Location Contig3025: 140408-143483
Sequence    

Annotation

kegg
ID rcu:RCOM_1192930
description Protein HVA22, putative
nr
ID XP_002520378.1
description Protein HVA22, putative [Ricinus communis]
swissprot
ID Q682H0
description HVA22-like protein f OS=Arabidopsis thaliana GN=HVA22F PE=2 SV=1
trembl
ID B9S309
description HVA22-like protein OS=Ricinus communis GN=RCOM_1192930 PE=3 SV=1
Gene Ontology
ID GO:0016021
description hva22-like protein f

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31920: 140746-141544
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003025_160 0.0 - - Protein HVA22, putative [Ricinus communis]
2 Hb_008225_050 0.0460102787 - - hypothetical protein PRUPE_ppa004332mg [Prunus persica]
3 Hb_000254_130 0.0465196387 - - Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]
4 Hb_004970_060 0.0514669728 - - PREDICTED: uncharacterized protein LOC100259061 [Vitis vinifera]
5 Hb_002259_090 0.0563942675 - - PREDICTED: ABC transporter G family member 11 [Jatropha curcas]
6 Hb_007537_040 0.0574944631 - - PREDICTED: uncharacterized protein LOC105803495 [Gossypium raimondii]
7 Hb_001999_230 0.0583167178 - - PREDICTED: uncharacterized protein LOC105630678 [Jatropha curcas]
8 Hb_008847_050 0.0621658894 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000369_110 0.0654312156 - - ankyrin repeat-containing protein, putative [Ricinus communis]
10 Hb_033363_040 0.0659806272 - - PREDICTED: probable galacturonosyltransferase-like 3 [Jatropha curcas]
11 Hb_001975_100 0.0680294892 - - chlorophyll a-b binding protein 151, chloroplastic [Jatropha curcas]
12 Hb_002752_020 0.0688705078 - - FKBP-type peptidyl-prolyl cis-trans isomerase 3 family protein [Populus trichocarpa]
13 Hb_001007_070 0.0692357489 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
14 Hb_005063_030 0.0750071996 - - Photosystem II reaction center W protein, chloroplast precursor, putative [Ricinus communis]
15 Hb_001141_100 0.0758804092 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like [Jatropha curcas]
16 Hb_004338_050 0.0769444062 - - hypothetical protein POPTR_0004s02760g [Populus trichocarpa]
17 Hb_003623_080 0.0774127378 - - PREDICTED: pheophytinase, chloroplastic [Populus euphratica]
18 Hb_001735_040 0.0781568714 - - PREDICTED: F-box protein SKIP2-like isoform X2 [Populus euphratica]
19 Hb_002852_010 0.0781862372 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
20 Hb_001277_130 0.0789966157 - - PREDICTED: dentin sialophosphoprotein-like [Jatropha curcas]

Gene co-expression network

sample Hb_003025_160 Hb_003025_160 Hb_008225_050 Hb_008225_050 Hb_003025_160--Hb_008225_050 Hb_000254_130 Hb_000254_130 Hb_003025_160--Hb_000254_130 Hb_004970_060 Hb_004970_060 Hb_003025_160--Hb_004970_060 Hb_002259_090 Hb_002259_090 Hb_003025_160--Hb_002259_090 Hb_007537_040 Hb_007537_040 Hb_003025_160--Hb_007537_040 Hb_001999_230 Hb_001999_230 Hb_003025_160--Hb_001999_230 Hb_008225_050--Hb_007537_040 Hb_008225_050--Hb_000254_130 Hb_002752_020 Hb_002752_020 Hb_008225_050--Hb_002752_020 Hb_008225_050--Hb_004970_060 Hb_001975_100 Hb_001975_100 Hb_008225_050--Hb_001975_100 Hb_000254_130--Hb_001975_100 Hb_000254_130--Hb_001999_230 Hb_005063_030 Hb_005063_030 Hb_000254_130--Hb_005063_030 Hb_000254_130--Hb_002752_020 Hb_004970_060--Hb_007537_040 Hb_004970_060--Hb_000254_130 Hb_004970_060--Hb_001999_230 Hb_153258_040 Hb_153258_040 Hb_004970_060--Hb_153258_040 Hb_008847_050 Hb_008847_050 Hb_002259_090--Hb_008847_050 Hb_001007_070 Hb_001007_070 Hb_002259_090--Hb_001007_070 Hb_002259_090--Hb_001999_230 Hb_005054_120 Hb_005054_120 Hb_002259_090--Hb_005054_120 Hb_001277_130 Hb_001277_130 Hb_002259_090--Hb_001277_130 Hb_000369_110 Hb_000369_110 Hb_007537_040--Hb_000369_110 Hb_001735_040 Hb_001735_040 Hb_007537_040--Hb_001735_040 Hb_007537_040--Hb_002752_020 Hb_001999_230--Hb_001007_070 Hb_000099_120 Hb_000099_120 Hb_001999_230--Hb_000099_120 Hb_000497_050 Hb_000497_050 Hb_001999_230--Hb_000497_050 Hb_001564_120 Hb_001564_120 Hb_001999_230--Hb_001564_120 Hb_001999_230--Hb_001975_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.02661 9.2046 6.20813 0.0603925 0.0265962
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.242446 15.2636

CAGE analysis