Hb_001564_120

Information

Type -
Description -
Location Contig1564: 132546-134002
Sequence    

Annotation

kegg
ID pop:POPTR_0012s05520g
description POPTRDRAFT_569844; peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein
nr
ID XP_011008961.1
description PREDICTED: peptidyl-prolyl cis-trans isomerase CYP26-2, chloroplastic [Populus euphratica]
swissprot
ID F4HTT6
description Peptidyl-prolyl cis-trans isomerase CYP26-2, chloroplastic OS=Arabidopsis thaliana GN=CYP26-2 PE=2 SV=1
trembl
ID B9I2N9
description Peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein OS=Populus trichocarpa GN=POPTR_0012s05520g PE=4 SV=1
Gene Ontology
ID GO:0009507
description peptidyl-prolyl cis-trans isomerase cyp26- chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13598: 132554-133890
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001564_120 0.0 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP26-2, chloroplastic [Populus euphratica]
2 Hb_005063_030 0.040395799 - - Photosystem II reaction center W protein, chloroplast precursor, putative [Ricinus communis]
3 Hb_000098_040 0.0460402673 - - Ferredoxin-2, chloroplast precursor, putative [Ricinus communis]
4 Hb_001999_230 0.0523524502 - - PREDICTED: uncharacterized protein LOC105630678 [Jatropha curcas]
5 Hb_001975_100 0.0527872864 - - chlorophyll a-b binding protein 151, chloroplastic [Jatropha curcas]
6 Hb_000099_120 0.055382897 - - PREDICTED: GDT1-like protein 1, chloroplastic isoform X3 [Jatropha curcas]
7 Hb_001007_070 0.0601527611 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
8 Hb_000906_080 0.0613176589 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
9 Hb_000392_470 0.0624691724 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005054_120 0.0646347886 - - PREDICTED: sedoheptulose-1,7-bisphosphatase, chloroplastic [Jatropha curcas]
11 Hb_000352_230 0.0669778698 - - PREDICTED: glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic isoform X2 [Jatropha curcas]
12 Hb_000254_130 0.0679643087 - - Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]
13 Hb_000077_380 0.0688758731 - - PREDICTED: protochlorophyllide reductase [Jatropha curcas]
14 Hb_002809_030 0.0691719441 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000101_330 0.070779638 - - -
16 Hb_000497_050 0.072124273 - - PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Jatropha curcas]
17 Hb_000545_180 0.0721522988 - - Photosystem II stability/assembly factor HCF136, chloroplast precursor, putative [Ricinus communis]
18 Hb_000307_100 0.0731189138 - - Plastocyanin A, chloroplast precursor, putative [Ricinus communis]
19 Hb_153258_040 0.0768029857 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like [Jatropha curcas]
20 Hb_001958_060 0.0773961433 - - PREDICTED: calcium uptake protein 1, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_001564_120 Hb_001564_120 Hb_005063_030 Hb_005063_030 Hb_001564_120--Hb_005063_030 Hb_000098_040 Hb_000098_040 Hb_001564_120--Hb_000098_040 Hb_001999_230 Hb_001999_230 Hb_001564_120--Hb_001999_230 Hb_001975_100 Hb_001975_100 Hb_001564_120--Hb_001975_100 Hb_000099_120 Hb_000099_120 Hb_001564_120--Hb_000099_120 Hb_001007_070 Hb_001007_070 Hb_001564_120--Hb_001007_070 Hb_005063_030--Hb_001975_100 Hb_000254_130 Hb_000254_130 Hb_005063_030--Hb_000254_130 Hb_000101_330 Hb_000101_330 Hb_005063_030--Hb_000101_330 Hb_001292_030 Hb_001292_030 Hb_005063_030--Hb_001292_030 Hb_005063_030--Hb_001999_230 Hb_000352_230 Hb_000352_230 Hb_000098_040--Hb_000352_230 Hb_000307_100 Hb_000307_100 Hb_000098_040--Hb_000307_100 Hb_000329_430 Hb_000329_430 Hb_000098_040--Hb_000329_430 Hb_009771_090 Hb_009771_090 Hb_000098_040--Hb_009771_090 Hb_002809_030 Hb_002809_030 Hb_000098_040--Hb_002809_030 Hb_001999_230--Hb_001007_070 Hb_001999_230--Hb_000254_130 Hb_001999_230--Hb_000099_120 Hb_000497_050 Hb_000497_050 Hb_001999_230--Hb_000497_050 Hb_001999_230--Hb_001975_100 Hb_001975_100--Hb_000254_130 Hb_001006_040 Hb_001006_040 Hb_001975_100--Hb_001006_040 Hb_001975_100--Hb_001292_030 Hb_008225_050 Hb_008225_050 Hb_001975_100--Hb_008225_050 Hb_000099_120--Hb_001007_070 Hb_000392_470 Hb_000392_470 Hb_000099_120--Hb_000392_470 Hb_004338_050 Hb_004338_050 Hb_000099_120--Hb_004338_050 Hb_000099_120--Hb_000254_130 Hb_005054_120 Hb_005054_120 Hb_001007_070--Hb_005054_120 Hb_002259_090 Hb_002259_090 Hb_001007_070--Hb_002259_090 Hb_009193_070 Hb_009193_070 Hb_001007_070--Hb_009193_070 Hb_001007_070--Hb_000254_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.26751 11.0143 6.49951 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0366593 0.0288385 0 0.299913 24.9404

CAGE analysis