Hb_009771_090

Information

Type -
Description -
Location Contig9771: 86701-87051
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009771_090 0.0 - - -
2 Hb_000352_230 0.0346539342 - - PREDICTED: glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic isoform X2 [Jatropha curcas]
3 Hb_000098_040 0.0500340647 - - Ferredoxin-2, chloroplast precursor, putative [Ricinus communis]
4 Hb_000329_430 0.054424666 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE10 [Jatropha curcas]
5 Hb_000545_180 0.0563312435 - - Photosystem II stability/assembly factor HCF136, chloroplast precursor, putative [Ricinus communis]
6 Hb_000307_100 0.0588254398 - - Plastocyanin A, chloroplast precursor, putative [Ricinus communis]
7 Hb_014361_120 0.059239468 - - PREDICTED: BTB/POZ domain-containing protein At5g67385 [Jatropha curcas]
8 Hb_000826_010 0.0614436797 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002809_030 0.0628416317 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001269_030 0.0670884702 - - PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
11 Hb_002289_070 0.0812711331 - - PREDICTED: magnesium-chelatase subunit ChlH, chloroplastic [Jatropha curcas]
12 Hb_000320_370 0.0818247795 - - PREDICTED: ATP synthase gamma chain, chloroplastic [Jatropha curcas]
13 Hb_002701_250 0.0819243697 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
14 Hb_001564_120 0.0838858954 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP26-2, chloroplastic [Populus euphratica]
15 Hb_011381_120 0.0861544755 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2-like [Jatropha curcas]
16 Hb_002818_130 0.0863590008 - - cytochrome P450, putative [Ricinus communis]
17 Hb_001028_040 0.0895697488 - - hypothetical protein POPTR_0018s09860g [Populus trichocarpa]
18 Hb_002421_150 0.0949111137 - - hypothetical protein PRUPE_ppa020511mg [Prunus persica]
19 Hb_005054_120 0.0960461824 - - PREDICTED: sedoheptulose-1,7-bisphosphatase, chloroplastic [Jatropha curcas]
20 Hb_001191_060 0.0965710657 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Populus euphratica]

Gene co-expression network

sample Hb_009771_090 Hb_009771_090 Hb_000352_230 Hb_000352_230 Hb_009771_090--Hb_000352_230 Hb_000098_040 Hb_000098_040 Hb_009771_090--Hb_000098_040 Hb_000329_430 Hb_000329_430 Hb_009771_090--Hb_000329_430 Hb_000545_180 Hb_000545_180 Hb_009771_090--Hb_000545_180 Hb_000307_100 Hb_000307_100 Hb_009771_090--Hb_000307_100 Hb_014361_120 Hb_014361_120 Hb_009771_090--Hb_014361_120 Hb_000352_230--Hb_000098_040 Hb_000352_230--Hb_000545_180 Hb_002809_030 Hb_002809_030 Hb_000352_230--Hb_002809_030 Hb_000352_230--Hb_000307_100 Hb_000352_230--Hb_014361_120 Hb_000098_040--Hb_000307_100 Hb_001564_120 Hb_001564_120 Hb_000098_040--Hb_001564_120 Hb_000098_040--Hb_000329_430 Hb_000098_040--Hb_002809_030 Hb_000329_430--Hb_000307_100 Hb_003925_120 Hb_003925_120 Hb_000329_430--Hb_003925_120 Hb_000826_010 Hb_000826_010 Hb_000329_430--Hb_000826_010 Hb_000329_430--Hb_000352_230 Hb_000545_180--Hb_014361_120 Hb_000545_180--Hb_000098_040 Hb_001269_030 Hb_001269_030 Hb_000545_180--Hb_001269_030 Hb_001416_130 Hb_001416_130 Hb_000545_180--Hb_001416_130 Hb_000307_100--Hb_002809_030 Hb_010697_020 Hb_010697_020 Hb_000307_100--Hb_010697_020 Hb_002289_070 Hb_002289_070 Hb_014361_120--Hb_002289_070 Hb_011381_120 Hb_011381_120 Hb_014361_120--Hb_011381_120 Hb_014361_120--Hb_000098_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.195346 1.15101 0.713212 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 3.41275

CAGE analysis