Hb_010697_020

Information

Type -
Description -
Location Contig10697: 11075-13461
Sequence    

Annotation

kegg
ID rcu:RCOM_1313610
description hypothetical protein
nr
ID XP_002518917.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q7XA78
description Beta-carotene isomerase D27, chloroplastic OS=Arabidopsis thaliana GN=D27 PE=1 SV=1
trembl
ID B9RYU8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1313610 PE=4 SV=1
Gene Ontology
ID GO:0044434
description beta-carotene isomerase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02120: 11129-13419
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010697_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001348_160 0.0400734588 - - Photosystem II 22 kDa protein, chloroplast precursor, putative [Ricinus communis]
3 Hb_002301_070 0.0444646581 - - PREDICTED: triose phosphate/phosphate translocator TPT, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_003787_030 0.0550350805 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000928_260 0.058099263 - - hypothetical protein POPTR_0019s06080g [Populus trichocarpa]
6 Hb_001191_060 0.0585445153 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Populus euphratica]
7 Hb_001269_480 0.0634778365 - - PREDICTED: photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Jatropha curcas]
8 Hb_000307_100 0.0640775627 - - Plastocyanin A, chloroplast precursor, putative [Ricinus communis]
9 Hb_003033_020 0.064197066 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9-like [Jatropha curcas]
10 Hb_002809_030 0.0646871042 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002818_130 0.0688426458 - - cytochrome P450, putative [Ricinus communis]
12 Hb_001310_020 0.0694960399 - - PREDICTED: cyclin-D5-1-like isoform X2 [Jatropha curcas]
13 Hb_000704_020 0.074066508 - - conserved hypothetical protein [Ricinus communis]
14 Hb_006573_240 0.0752018481 - - PREDICTED: anthocyanidin 5,3-O-glucosyltransferase-like [Jatropha curcas]
15 Hb_000221_130 0.0759799105 - - thylakoid lumenal 29 kDa protein, chloroplastic [Jatropha curcas]
16 Hb_158597_010 0.0759978696 - - PREDICTED: serine hydroxymethyltransferase, mitochondrial [Jatropha curcas]
17 Hb_004143_080 0.0774121398 - - PREDICTED: protein ECERIFERUM 1 [Jatropha curcas]
18 Hb_000940_060 0.077997531 - - hypothetical protein POPTR_0009s13250g [Populus trichocarpa]
19 Hb_154064_010 0.0788181905 - - PREDICTED: uncharacterized protein LOC105780682 [Gossypium raimondii]
20 Hb_029622_060 0.0790354761 - - PREDICTED: putative lipase ROG1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_010697_020 Hb_010697_020 Hb_001348_160 Hb_001348_160 Hb_010697_020--Hb_001348_160 Hb_002301_070 Hb_002301_070 Hb_010697_020--Hb_002301_070 Hb_003787_030 Hb_003787_030 Hb_010697_020--Hb_003787_030 Hb_000928_260 Hb_000928_260 Hb_010697_020--Hb_000928_260 Hb_001191_060 Hb_001191_060 Hb_010697_020--Hb_001191_060 Hb_001269_480 Hb_001269_480 Hb_010697_020--Hb_001269_480 Hb_001348_160--Hb_001191_060 Hb_002809_030 Hb_002809_030 Hb_001348_160--Hb_002809_030 Hb_001348_160--Hb_001269_480 Hb_031862_220 Hb_031862_220 Hb_001348_160--Hb_031862_220 Hb_000373_210 Hb_000373_210 Hb_001348_160--Hb_000373_210 Hb_002301_070--Hb_000928_260 Hb_002301_070--Hb_003787_030 Hb_004143_080 Hb_004143_080 Hb_002301_070--Hb_004143_080 Hb_000815_120 Hb_000815_120 Hb_002301_070--Hb_000815_120 Hb_006573_240 Hb_006573_240 Hb_002301_070--Hb_006573_240 Hb_003787_030--Hb_000928_260 Hb_003787_030--Hb_006573_240 Hb_003787_030--Hb_000815_120 Hb_003787_030--Hb_004143_080 Hb_000928_260--Hb_006573_240 Hb_000883_080 Hb_000883_080 Hb_000928_260--Hb_000883_080 Hb_000928_260--Hb_004143_080 Hb_001310_020 Hb_001310_020 Hb_001191_060--Hb_001310_020 Hb_001191_060--Hb_001269_480 Hb_000012_370 Hb_000012_370 Hb_001191_060--Hb_000012_370 Hb_002818_130 Hb_002818_130 Hb_001191_060--Hb_002818_130 Hb_003033_020 Hb_003033_020 Hb_001191_060--Hb_003033_020 Hb_001269_480--Hb_002818_130 Hb_001269_480--Hb_001310_020 Hb_000221_130 Hb_000221_130 Hb_001269_480--Hb_000221_130 Hb_086022_020 Hb_086022_020 Hb_001269_480--Hb_086022_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.56413 41.4829 33.1862 0 0.0150111
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.269928 0.13272 0.0497375 0.0636327 146.009

CAGE analysis