Hb_000815_120

Information

Type -
Description -
Location Contig815: 136446-137432
Sequence    

Annotation

kegg
ID rcu:RCOM_0837400
description calcium ion binding protein, putative
nr
ID XP_002522463.1
description calcium ion binding protein, putative [Ricinus communis]
swissprot
ID Q9XI73
description Photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Arabidopsis thaliana GN=PNSL2 PE=1 SV=1
trembl
ID B9S8Z4
description Calcium ion binding protein, putative OS=Ricinus communis GN=RCOM_0837400 PE=4 SV=1
Gene Ontology
ID GO:0009534
description psbq-like protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59356: 136504-137302
cDNA
(Sanger)
(ID:Location)		 039_B12.ab1: 136594-137291

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000815_120 0.0 - - calcium ion binding protein, putative [Ricinus communis]
2 Hb_004143_080 0.0403622412 - - PREDICTED: protein ECERIFERUM 1 [Jatropha curcas]
3 Hb_004818_010 0.0501754509 - - hypothetical protein JCGZ_13628 [Jatropha curcas]
4 Hb_000704_020 0.0538655907 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001951_050 0.0548087561 - - chlorophyll A/B binding protein, putative [Ricinus communis]
6 Hb_002301_070 0.0560163602 - - PREDICTED: triose phosphate/phosphate translocator TPT, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_003093_050 0.0586099576 - - PREDICTED: uncharacterized protein LOC105641023 isoform X2 [Jatropha curcas]
8 Hb_003787_030 0.0586933773 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001097_110 0.0590720427 - - gibberellin 20-oxidase, putative [Ricinus communis]
10 Hb_000928_260 0.0655885375 - - hypothetical protein POPTR_0019s06080g [Populus trichocarpa]
11 Hb_077976_010 0.0667917169 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
12 Hb_000140_040 0.0692127637 - - PREDICTED: UDP-glycosyltransferase 79B6-like [Jatropha curcas]
13 Hb_158597_010 0.0699170532 - - PREDICTED: serine hydroxymethyltransferase, mitochondrial [Jatropha curcas]
14 Hb_029584_020 0.0704292257 - - conserved hypothetical protein [Ricinus communis]
15 Hb_081344_010 0.0707579569 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
16 Hb_000152_300 0.0714972571 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
17 Hb_000433_040 0.0716916237 - - -
18 Hb_001080_290 0.0725355749 - - PSI reaction center subunit II [Citrus sinensis]
19 Hb_000629_110 0.0726033904 - - PREDICTED: protein RTF2 homolog [Jatropha curcas]
20 Hb_001140_110 0.0728654723 - - hypothetical protein JCGZ_26123 [Jatropha curcas]

Gene co-expression network

sample Hb_000815_120 Hb_000815_120 Hb_004143_080 Hb_004143_080 Hb_000815_120--Hb_004143_080 Hb_004818_010 Hb_004818_010 Hb_000815_120--Hb_004818_010 Hb_000704_020 Hb_000704_020 Hb_000815_120--Hb_000704_020 Hb_001951_050 Hb_001951_050 Hb_000815_120--Hb_001951_050 Hb_002301_070 Hb_002301_070 Hb_000815_120--Hb_002301_070 Hb_003093_050 Hb_003093_050 Hb_000815_120--Hb_003093_050 Hb_004143_080--Hb_004818_010 Hb_004143_080--Hb_003093_050 Hb_004143_080--Hb_002301_070 Hb_004143_080--Hb_000704_020 Hb_004143_080--Hb_001951_050 Hb_004818_010--Hb_003093_050 Hb_004818_010--Hb_000704_020 Hb_029584_020 Hb_029584_020 Hb_004818_010--Hb_029584_020 Hb_000530_060 Hb_000530_060 Hb_004818_010--Hb_000530_060 Hb_000704_020--Hb_003093_050 Hb_158597_010 Hb_158597_010 Hb_000704_020--Hb_158597_010 Hb_000629_110 Hb_000629_110 Hb_000704_020--Hb_000629_110 Hb_001140_110 Hb_001140_110 Hb_001951_050--Hb_001140_110 Hb_001080_290 Hb_001080_290 Hb_001951_050--Hb_001080_290 Hb_001097_110 Hb_001097_110 Hb_001951_050--Hb_001097_110 Hb_042123_010 Hb_042123_010 Hb_001951_050--Hb_042123_010 Hb_000928_260 Hb_000928_260 Hb_002301_070--Hb_000928_260 Hb_003787_030 Hb_003787_030 Hb_002301_070--Hb_003787_030 Hb_010697_020 Hb_010697_020 Hb_002301_070--Hb_010697_020 Hb_006573_240 Hb_006573_240 Hb_002301_070--Hb_006573_240 Hb_003093_050--Hb_029584_020 Hb_003093_050--Hb_000629_110 Hb_003093_050--Hb_000530_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.663663 15.0455 17.8914 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.1166 0.0458477 0 0.295866 88.5233

CAGE analysis