Hb_000629_110

Information

Type -
Description -
Location Contig629: 135386-136412
Sequence    

Annotation

kegg
ID rcu:RCOM_0700320
description hypothetical protein
nr
ID XP_012071480.1
description PREDICTED: protein RTF2 homolog [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KR13
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04014 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000629_110 0.0 - - PREDICTED: protein RTF2 homolog [Jatropha curcas]
2 Hb_003093_050 0.048247846 - - PREDICTED: uncharacterized protein LOC105641023 isoform X2 [Jatropha curcas]
3 Hb_004818_010 0.0506913775 - - hypothetical protein JCGZ_13628 [Jatropha curcas]
4 Hb_004143_080 0.0604933745 - - PREDICTED: protein ECERIFERUM 1 [Jatropha curcas]
5 Hb_000704_020 0.0607033584 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000983_200 0.0613355713 - - PREDICTED: uncharacterized protein LOC105633924 [Jatropha curcas]
7 Hb_005736_030 0.065298246 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
8 Hb_000608_160 0.0653057059 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
9 Hb_001951_050 0.071676099 - - chlorophyll A/B binding protein, putative [Ricinus communis]
10 Hb_002995_060 0.0719361796 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
11 Hb_000815_120 0.0726033904 - - calcium ion binding protein, putative [Ricinus communis]
12 Hb_004920_080 0.0730714639 - - PREDICTED: calvin cycle protein CP12-2, chloroplastic-like [Jatropha curcas]
13 Hb_000530_060 0.0756554797 - - -
14 Hb_001089_120 0.0777370877 - - PREDICTED: pectinesterase [Jatropha curcas]
15 Hb_029584_020 0.0803149956 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004807_040 0.0819587371 - - PREDICTED: uncharacterized protein LOC104420559 [Eucalyptus grandis]
17 Hb_158597_010 0.0829965041 - - PREDICTED: serine hydroxymethyltransferase, mitochondrial [Jatropha curcas]
18 Hb_001775_010 0.0835381435 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004712_230 0.0853323739 - - PREDICTED: retrotransposon-like protein 1 [Jatropha curcas]
20 Hb_013405_240 0.0860777496 - - Hydroxyproline-rich glycoprotein family protein [Theobroma cacao]

Gene co-expression network

sample Hb_000629_110 Hb_000629_110 Hb_003093_050 Hb_003093_050 Hb_000629_110--Hb_003093_050 Hb_004818_010 Hb_004818_010 Hb_000629_110--Hb_004818_010 Hb_004143_080 Hb_004143_080 Hb_000629_110--Hb_004143_080 Hb_000704_020 Hb_000704_020 Hb_000629_110--Hb_000704_020 Hb_000983_200 Hb_000983_200 Hb_000629_110--Hb_000983_200 Hb_005736_030 Hb_005736_030 Hb_000629_110--Hb_005736_030 Hb_003093_050--Hb_004818_010 Hb_029584_020 Hb_029584_020 Hb_003093_050--Hb_029584_020 Hb_003093_050--Hb_004143_080 Hb_000530_060 Hb_000530_060 Hb_003093_050--Hb_000530_060 Hb_003093_050--Hb_000704_020 Hb_004818_010--Hb_000704_020 Hb_004818_010--Hb_004143_080 Hb_004818_010--Hb_029584_020 Hb_004818_010--Hb_000530_060 Hb_000815_120 Hb_000815_120 Hb_004818_010--Hb_000815_120 Hb_004143_080--Hb_000815_120 Hb_002301_070 Hb_002301_070 Hb_004143_080--Hb_002301_070 Hb_004143_080--Hb_000704_020 Hb_001951_050 Hb_001951_050 Hb_004143_080--Hb_001951_050 Hb_000704_020--Hb_000815_120 Hb_158597_010 Hb_158597_010 Hb_000704_020--Hb_158597_010 Hb_000983_200--Hb_000815_120 Hb_000983_200--Hb_003093_050 Hb_000983_200--Hb_004143_080 Hb_000983_200--Hb_004818_010 Hb_000983_200--Hb_005736_030 Hb_000029_150 Hb_000029_150 Hb_005736_030--Hb_000029_150 Hb_020805_090 Hb_020805_090 Hb_005736_030--Hb_020805_090 Hb_004712_230 Hb_004712_230 Hb_005736_030--Hb_004712_230 Hb_004631_020 Hb_004631_020 Hb_005736_030--Hb_004631_020 Hb_004807_040 Hb_004807_040 Hb_005736_030--Hb_004807_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0859095 1.08647 0.902807 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 6.60291

CAGE analysis