Hb_004807_040

Information

Type -
Description -
Location Contig4807: 34490-46324
Sequence    

Annotation

kegg
ID egr:104420559
description uncharacterized LOC104420559
nr
ID XP_010030680.1
description PREDICTED: uncharacterized protein LOC104420559 [Eucalyptus grandis]
swissprot
ID P33080
description Auxin-induced protein X10A OS=Glycine max PE=2 SV=1
trembl
ID A0A061E6C6
description SAUR-like auxin-responsive protein family OS=Theobroma cacao GN=TCM_006746 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44728: 46230-46687
cDNA
(Sanger)
(ID:Location)		 001_C07.ab1: 42433-42903 , 008_G09.ab1: 42433-42903

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004807_040 0.0 - - PREDICTED: uncharacterized protein LOC104420559 [Eucalyptus grandis]
2 Hb_001289_050 0.0472288319 - - hypothetical protein Poptr_cp075 [Populus trichocarpa]
3 Hb_101097_010 0.0599284096 - - polyprotein [Citrus endogenous pararetrovirus]
4 Hb_005736_030 0.0669721903 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
5 Hb_006133_010 0.0717123579 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
6 Hb_001310_020 0.0734308573 - - PREDICTED: cyclin-D5-1-like isoform X2 [Jatropha curcas]
7 Hb_000029_150 0.0780875854 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000815_120 0.080012686 - - calcium ion binding protein, putative [Ricinus communis]
9 Hb_000629_110 0.0819587371 - - PREDICTED: protein RTF2 homolog [Jatropha curcas]
10 Hb_000983_200 0.0843224031 - - PREDICTED: uncharacterized protein LOC105633924 [Jatropha curcas]
11 Hb_003093_050 0.0856520936 - - PREDICTED: uncharacterized protein LOC105641023 isoform X2 [Jatropha curcas]
12 Hb_001191_060 0.0871298459 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Populus euphratica]
13 Hb_011381_120 0.0873010268 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2-like [Jatropha curcas]
14 Hb_004818_010 0.0879415006 - - hypothetical protein JCGZ_13628 [Jatropha curcas]
15 Hb_158597_010 0.0885598953 - - PREDICTED: serine hydroxymethyltransferase, mitochondrial [Jatropha curcas]
16 Hb_000704_020 0.0887098289 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004712_230 0.0902325345 - - PREDICTED: retrotransposon-like protein 1 [Jatropha curcas]
18 Hb_004631_020 0.0912110859 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
19 Hb_000282_100 0.0914110011 - - PREDICTED: glycine dehydrogenase (decarboxylating), mitochondrial [Jatropha curcas]
20 Hb_002818_130 0.0918125701 - - cytochrome P450, putative [Ricinus communis]

Gene co-expression network

sample Hb_004807_040 Hb_004807_040 Hb_001289_050 Hb_001289_050 Hb_004807_040--Hb_001289_050 Hb_101097_010 Hb_101097_010 Hb_004807_040--Hb_101097_010 Hb_005736_030 Hb_005736_030 Hb_004807_040--Hb_005736_030 Hb_006133_010 Hb_006133_010 Hb_004807_040--Hb_006133_010 Hb_001310_020 Hb_001310_020 Hb_004807_040--Hb_001310_020 Hb_000029_150 Hb_000029_150 Hb_004807_040--Hb_000029_150 Hb_000282_100 Hb_000282_100 Hb_001289_050--Hb_000282_100 Hb_009093_020 Hb_009093_020 Hb_001289_050--Hb_009093_020 Hb_000841_040 Hb_000841_040 Hb_001289_050--Hb_000841_040 Hb_011381_120 Hb_011381_120 Hb_001289_050--Hb_011381_120 Hb_001579_050 Hb_001579_050 Hb_001289_050--Hb_001579_050 Hb_013405_240 Hb_013405_240 Hb_101097_010--Hb_013405_240 Hb_007416_250 Hb_007416_250 Hb_101097_010--Hb_007416_250 Hb_000530_060 Hb_000530_060 Hb_101097_010--Hb_000530_060 Hb_101097_010--Hb_000029_150 Hb_158597_010 Hb_158597_010 Hb_101097_010--Hb_158597_010 Hb_005736_030--Hb_000029_150 Hb_020805_090 Hb_020805_090 Hb_005736_030--Hb_020805_090 Hb_004712_230 Hb_004712_230 Hb_005736_030--Hb_004712_230 Hb_000629_110 Hb_000629_110 Hb_005736_030--Hb_000629_110 Hb_004631_020 Hb_004631_020 Hb_005736_030--Hb_004631_020 Hb_004459_050 Hb_004459_050 Hb_006133_010--Hb_004459_050 Hb_002659_050 Hb_002659_050 Hb_006133_010--Hb_002659_050 Hb_006133_010--Hb_101097_010 Hb_006133_010--Hb_001289_050 Hb_000270_040 Hb_000270_040 Hb_006133_010--Hb_000270_040 Hb_001191_060 Hb_001191_060 Hb_001310_020--Hb_001191_060 Hb_002818_130 Hb_002818_130 Hb_001310_020--Hb_002818_130 Hb_001269_480 Hb_001269_480 Hb_001310_020--Hb_001269_480 Hb_001310_020--Hb_011381_120 Hb_001348_160 Hb_001348_160 Hb_001310_020--Hb_001348_160 Hb_000221_130 Hb_000221_130 Hb_001310_020--Hb_000221_130 Hb_000029_150--Hb_013405_240 Hb_000243_190 Hb_000243_190 Hb_000029_150--Hb_000243_190 Hb_000029_150--Hb_007416_250 Hb_132840_050 Hb_132840_050 Hb_000029_150--Hb_132840_050 Hb_013818_020 Hb_013818_020 Hb_000029_150--Hb_013818_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0281099 0.802957 0.545956 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0552055 3.91152

CAGE analysis