Hb_000282_100

Information

Type -
Description -
Location Contig282: 165494-172459
Sequence    

Annotation

kegg
ID rcu:RCOM_0797460
description glycine dehydrogenase, putative (EC:1.3.1.74)
nr
ID XP_012077290.1
description PREDICTED: glycine dehydrogenase (decarboxylating), mitochondrial [Jatropha curcas]
swissprot
ID O49954
description Glycine dehydrogenase (decarboxylating), mitochondrial OS=Solanum tuberosum GN=GDCSP PE=2 SV=1
trembl
ID A0A067KD00
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07672 PE=3 SV=1
Gene Ontology
ID GO:0004375
description glycine dehydrogenase mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29528: 165547-172427 , PASA_asmbl_29529: 165555-166966 , PASA_asmbl_29530: 172651-173053
cDNA
(Sanger)
(ID:Location)		 038_I11.ab1: 165556-166966

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000282_100 0.0 - - PREDICTED: glycine dehydrogenase (decarboxylating), mitochondrial [Jatropha curcas]
2 Hb_001289_050 0.0585144986 - - hypothetical protein Poptr_cp075 [Populus trichocarpa]
3 Hb_009093_020 0.0625038444 - - PREDICTED: uncharacterized protein LOC105642100 [Jatropha curcas]
4 Hb_000029_390 0.0650799442 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
5 Hb_000841_040 0.0657066125 transcription factor TF Family: C2C2-CO-like transcription factor, putative [Ricinus communis]
6 Hb_004631_020 0.0676305478 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
7 Hb_001832_180 0.0739619135 transcription factor TF Family: C2C2-GATA hypothetical protein RCOM_1046780 [Ricinus communis]
8 Hb_001135_170 0.0800923748 transcription factor TF Family: Orphans Two-component response regulator ARR2, putative [Ricinus communis]
9 Hb_007122_010 0.0813253826 - - hypothetical protein JCGZ_21227 [Jatropha curcas]
10 Hb_000858_050 0.0815087713 - - kinase, putative [Ricinus communis]
11 Hb_001951_040 0.0835331495 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]
12 Hb_003090_050 0.0857588753 - - fructose-1,6-bisphosphatase, putative [Ricinus communis]
13 Hb_002995_060 0.0869167192 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
14 Hb_001135_190 0.0871670335 transcription factor TF Family: Orphans Pseudo response regulator isoform 11 [Theobroma cacao]
15 Hb_001517_060 0.0872387136 - - phosphoribulose kinase, putative [Ricinus communis]
16 Hb_004712_230 0.0900611577 - - PREDICTED: retrotransposon-like protein 1 [Jatropha curcas]
17 Hb_004920_080 0.0913792255 - - PREDICTED: calvin cycle protein CP12-2, chloroplastic-like [Jatropha curcas]
18 Hb_004807_040 0.0914110011 - - PREDICTED: uncharacterized protein LOC104420559 [Eucalyptus grandis]
19 Hb_005736_030 0.0915876133 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
20 Hb_011381_120 0.0918155342 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000282_100 Hb_000282_100 Hb_001289_050 Hb_001289_050 Hb_000282_100--Hb_001289_050 Hb_009093_020 Hb_009093_020 Hb_000282_100--Hb_009093_020 Hb_000029_390 Hb_000029_390 Hb_000282_100--Hb_000029_390 Hb_000841_040 Hb_000841_040 Hb_000282_100--Hb_000841_040 Hb_004631_020 Hb_004631_020 Hb_000282_100--Hb_004631_020 Hb_001832_180 Hb_001832_180 Hb_000282_100--Hb_001832_180 Hb_004807_040 Hb_004807_040 Hb_001289_050--Hb_004807_040 Hb_001289_050--Hb_009093_020 Hb_001289_050--Hb_000841_040 Hb_011381_120 Hb_011381_120 Hb_001289_050--Hb_011381_120 Hb_001579_050 Hb_001579_050 Hb_001289_050--Hb_001579_050 Hb_009093_020--Hb_000841_040 Hb_009093_020--Hb_011381_120 Hb_001517_060 Hb_001517_060 Hb_009093_020--Hb_001517_060 Hb_003090_050 Hb_003090_050 Hb_009093_020--Hb_003090_050 Hb_004920_080 Hb_004920_080 Hb_000029_390--Hb_004920_080 Hb_002995_060 Hb_002995_060 Hb_000029_390--Hb_002995_060 Hb_000029_390--Hb_009093_020 Hb_000029_390--Hb_001517_060 Hb_000029_390--Hb_004631_020 Hb_000841_040--Hb_003090_050 Hb_000111_460 Hb_000111_460 Hb_000841_040--Hb_000111_460 Hb_000841_040--Hb_011381_120 Hb_000841_040--Hb_001832_180 Hb_000841_040--Hb_004631_020 Hb_004712_230 Hb_004712_230 Hb_004631_020--Hb_004712_230 Hb_004631_020--Hb_003090_050 Hb_001135_170 Hb_001135_170 Hb_004631_020--Hb_001135_170 Hb_005736_030 Hb_005736_030 Hb_004631_020--Hb_005736_030 Hb_032631_060 Hb_032631_060 Hb_004631_020--Hb_032631_060 Hb_001832_180--Hb_003090_050 Hb_000010_380 Hb_000010_380 Hb_001832_180--Hb_000010_380 Hb_001832_180--Hb_001135_170 Hb_001287_070 Hb_001287_070 Hb_001832_180--Hb_001287_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0565747 13.6844 147.878 49.1601 0.110107 0.112037
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.17569 0.516174 0.0707433 10.6711 712.137

CAGE analysis