Hb_000841_040

Information

Type transcription factor
Description TF Family: C2C2-CO-like
Location Contig841: 67463-69320
Sequence    

Annotation

kegg
ID rcu:RCOM_0200040
description transcription factor, putative
nr
ID XP_002533412.1
description transcription factor, putative [Ricinus communis]
swissprot
ID Q8RWD0
description Zinc finger protein CONSTANS-LIKE 16 OS=Arabidopsis thaliana GN=COL16 PE=2 SV=2
trembl
ID B9T593
description Transcription factor, putative OS=Ricinus communis GN=RCOM_0200040 PE=4 SV=1
Gene Ontology
ID GO:0005622
description zinc finger protein constans-like 16-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60143: 67926-68232
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000841_040 0.0 transcription factor TF Family: C2C2-CO-like transcription factor, putative [Ricinus communis]
2 Hb_003090_050 0.0362042264 - - fructose-1,6-bisphosphatase, putative [Ricinus communis]
3 Hb_009093_020 0.0412099327 - - PREDICTED: uncharacterized protein LOC105642100 [Jatropha curcas]
4 Hb_000111_460 0.0533134796 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
5 Hb_011381_120 0.0548453094 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2-like [Jatropha curcas]
6 Hb_001832_180 0.0549860104 transcription factor TF Family: C2C2-GATA hypothetical protein RCOM_1046780 [Ricinus communis]
7 Hb_004631_020 0.0610155253 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
8 Hb_000282_100 0.0657066125 - - PREDICTED: glycine dehydrogenase (decarboxylating), mitochondrial [Jatropha curcas]
9 Hb_001287_070 0.0683289473 - - latex plastidic aldolase-like protein [Hevea brasiliensis]
10 Hb_001289_050 0.0695432811 - - hypothetical protein Poptr_cp075 [Populus trichocarpa]
11 Hb_008748_050 0.0746757579 - - PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Populus euphratica]
12 Hb_000010_380 0.0747079811 - - hypothetical protein CICLE_v10020897mg [Citrus clementina]
13 Hb_000923_030 0.0752244289 - - F-box family protein [Populus trichocarpa]
14 Hb_004712_230 0.0771512799 - - PREDICTED: retrotransposon-like protein 1 [Jatropha curcas]
15 Hb_000482_030 0.0777069834 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER-like isoform X1 [Populus euphratica]
16 Hb_001135_170 0.0788682284 transcription factor TF Family: Orphans Two-component response regulator ARR2, putative [Ricinus communis]
17 Hb_001517_060 0.0792695741 - - phosphoribulose kinase, putative [Ricinus communis]
18 Hb_001310_020 0.082407968 - - PREDICTED: cyclin-D5-1-like isoform X2 [Jatropha curcas]
19 Hb_000009_470 0.0833543672 - - Oxygen-evolving enhancer protein 1, chloroplast precursor, putative [Ricinus communis]
20 Hb_002818_130 0.0846323748 - - cytochrome P450, putative [Ricinus communis]

Gene co-expression network

sample Hb_000841_040 Hb_000841_040 Hb_003090_050 Hb_003090_050 Hb_000841_040--Hb_003090_050 Hb_009093_020 Hb_009093_020 Hb_000841_040--Hb_009093_020 Hb_000111_460 Hb_000111_460 Hb_000841_040--Hb_000111_460 Hb_011381_120 Hb_011381_120 Hb_000841_040--Hb_011381_120 Hb_001832_180 Hb_001832_180 Hb_000841_040--Hb_001832_180 Hb_004631_020 Hb_004631_020 Hb_000841_040--Hb_004631_020 Hb_003090_050--Hb_000111_460 Hb_000923_030 Hb_000923_030 Hb_003090_050--Hb_000923_030 Hb_001287_070 Hb_001287_070 Hb_003090_050--Hb_001287_070 Hb_008748_050 Hb_008748_050 Hb_003090_050--Hb_008748_050 Hb_000010_380 Hb_000010_380 Hb_003090_050--Hb_000010_380 Hb_009093_020--Hb_011381_120 Hb_001517_060 Hb_001517_060 Hb_009093_020--Hb_001517_060 Hb_001289_050 Hb_001289_050 Hb_009093_020--Hb_001289_050 Hb_000282_100 Hb_000282_100 Hb_009093_020--Hb_000282_100 Hb_009093_020--Hb_003090_050 Hb_000111_460--Hb_008748_050 Hb_000111_460--Hb_001287_070 Hb_005000_120 Hb_005000_120 Hb_000111_460--Hb_005000_120 Hb_000111_460--Hb_011381_120 Hb_002818_130 Hb_002818_130 Hb_011381_120--Hb_002818_130 Hb_001310_020 Hb_001310_020 Hb_011381_120--Hb_001310_020 Hb_011381_120--Hb_003090_050 Hb_001832_180--Hb_003090_050 Hb_001832_180--Hb_000010_380 Hb_001135_170 Hb_001135_170 Hb_001832_180--Hb_001135_170 Hb_001832_180--Hb_001287_070 Hb_001832_180--Hb_000282_100 Hb_004712_230 Hb_004712_230 Hb_004631_020--Hb_004712_230 Hb_004631_020--Hb_003090_050 Hb_004631_020--Hb_001135_170 Hb_005736_030 Hb_005736_030 Hb_004631_020--Hb_005736_030 Hb_032631_060 Hb_032631_060 Hb_004631_020--Hb_032631_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.907024 11.0294 3.5447 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0260339 0 0 0.440633 37.8529

CAGE analysis