Hb_005736_030

Information

Type -
Description -
Location Contig5736: 46754-48532
Sequence    

Annotation

kegg
ID rcu:RCOM_0559380
description thioredoxin m(mitochondrial)-type, putative (EC:5.3.4.1)
nr
ID XP_002520245.1
description thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
swissprot
ID P48384
description Thioredoxin M-type, chloroplastic OS=Pisum sativum PE=2 SV=1
trembl
ID B9S2M6
description Thioredoxin m(Mitochondrial)-type, putative OS=Ricinus communis GN=RCOM_0559380 PE=4 SV=1
Gene Ontology
ID GO:0005623
description thioredoxin m- chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49516: 46826-48519
cDNA
(Sanger)
(ID:Location)		 002_M16.ab1: 46900-48437 , 003_I12.ab1: 46926-48490 , 008_B17.ab1: 46926-48490 , 020_C02.ab1: 46903-48490 , 028_A14.ab1: 46926-48490 , 048_B04.ab1: 46926-48490 , 048_C14.ab1: 46903-48519 , 050_G16.ab1: 47066-48519

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005736_030 0.0 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
2 Hb_000029_150 0.0490355732 - - conserved hypothetical protein [Ricinus communis]
3 Hb_020805_090 0.0635888302 - - glyceraldehyde 3-phosphate dehydrogenase, putative [Ricinus communis]
4 Hb_004712_230 0.0635999142 - - PREDICTED: retrotransposon-like protein 1 [Jatropha curcas]
5 Hb_000629_110 0.065298246 - - PREDICTED: protein RTF2 homolog [Jatropha curcas]
6 Hb_004631_020 0.065307108 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
7 Hb_004807_040 0.0669721903 - - PREDICTED: uncharacterized protein LOC104420559 [Eucalyptus grandis]
8 Hb_013405_240 0.0682939944 - - Hydroxyproline-rich glycoprotein family protein [Theobroma cacao]
9 Hb_007416_250 0.0683805195 - - -
10 Hb_001951_040 0.0686111935 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]
11 Hb_000282_110 0.0693716497 transcription factor TF Family: C2C2-GATA hypothetical protein POPTR_0006s24560g [Populus trichocarpa]
12 Hb_101097_010 0.0695765045 - - polyprotein [Citrus endogenous pararetrovirus]
13 Hb_004818_010 0.0696255344 - - hypothetical protein JCGZ_13628 [Jatropha curcas]
14 Hb_000704_020 0.0703399808 - - conserved hypothetical protein [Ricinus communis]
15 Hb_010812_030 0.0704061275 - - conserved hypothetical protein [Ricinus communis]
16 Hb_158597_010 0.0732739011 - - PREDICTED: serine hydroxymethyltransferase, mitochondrial [Jatropha curcas]
17 Hb_003093_050 0.0735446113 - - PREDICTED: uncharacterized protein LOC105641023 isoform X2 [Jatropha curcas]
18 Hb_013818_020 0.075805793 - - hypothetical protein POPTR_0005s21070g [Populus trichocarpa]
19 Hb_004855_030 0.0799637567 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
20 Hb_004920_080 0.0801039589 - - PREDICTED: calvin cycle protein CP12-2, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_005736_030 Hb_005736_030 Hb_000029_150 Hb_000029_150 Hb_005736_030--Hb_000029_150 Hb_020805_090 Hb_020805_090 Hb_005736_030--Hb_020805_090 Hb_004712_230 Hb_004712_230 Hb_005736_030--Hb_004712_230 Hb_000629_110 Hb_000629_110 Hb_005736_030--Hb_000629_110 Hb_004631_020 Hb_004631_020 Hb_005736_030--Hb_004631_020 Hb_004807_040 Hb_004807_040 Hb_005736_030--Hb_004807_040 Hb_013405_240 Hb_013405_240 Hb_000029_150--Hb_013405_240 Hb_000243_190 Hb_000243_190 Hb_000029_150--Hb_000243_190 Hb_007416_250 Hb_007416_250 Hb_000029_150--Hb_007416_250 Hb_132840_050 Hb_132840_050 Hb_000029_150--Hb_132840_050 Hb_013818_020 Hb_013818_020 Hb_000029_150--Hb_013818_020 Hb_004855_030 Hb_004855_030 Hb_020805_090--Hb_004855_030 Hb_000349_150 Hb_000349_150 Hb_020805_090--Hb_000349_150 Hb_003208_010 Hb_003208_010 Hb_020805_090--Hb_003208_010 Hb_000977_260 Hb_000977_260 Hb_020805_090--Hb_000977_260 Hb_011689_070 Hb_011689_070 Hb_020805_090--Hb_011689_070 Hb_003251_010 Hb_003251_010 Hb_020805_090--Hb_003251_010 Hb_004712_230--Hb_004631_020 Hb_011381_120 Hb_011381_120 Hb_004712_230--Hb_011381_120 Hb_002995_060 Hb_002995_060 Hb_004712_230--Hb_002995_060 Hb_002818_130 Hb_002818_130 Hb_004712_230--Hb_002818_130 Hb_003653_030 Hb_003653_030 Hb_004712_230--Hb_003653_030 Hb_003093_050 Hb_003093_050 Hb_000629_110--Hb_003093_050 Hb_004818_010 Hb_004818_010 Hb_000629_110--Hb_004818_010 Hb_004143_080 Hb_004143_080 Hb_000629_110--Hb_004143_080 Hb_000704_020 Hb_000704_020 Hb_000629_110--Hb_000704_020 Hb_000983_200 Hb_000983_200 Hb_000629_110--Hb_000983_200 Hb_000841_040 Hb_000841_040 Hb_004631_020--Hb_000841_040 Hb_003090_050 Hb_003090_050 Hb_004631_020--Hb_003090_050 Hb_001135_170 Hb_001135_170 Hb_004631_020--Hb_001135_170 Hb_032631_060 Hb_032631_060 Hb_004631_020--Hb_032631_060 Hb_001289_050 Hb_001289_050 Hb_004807_040--Hb_001289_050 Hb_101097_010 Hb_101097_010 Hb_004807_040--Hb_101097_010 Hb_006133_010 Hb_006133_010 Hb_004807_040--Hb_006133_010 Hb_001310_020 Hb_001310_020 Hb_004807_040--Hb_001310_020 Hb_004807_040--Hb_000029_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.102794 3.23534 108.574 63.6774 0.137579 0.109573
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.997929 0.566808 0.0798557 1.33502 563.875

CAGE analysis