Hb_013818_020

Information

Type -
Description -
Location Contig13818: 5947-7099
Sequence    

Annotation

kegg
ID pop:POPTR_0005s21070g
description POPTRDRAFT_559340; hypothetical protein
nr
ID XP_002306681.2
description hypothetical protein POPTR_0005s21070g [Populus trichocarpa]
swissprot
ID P16273
description Pathogen-related protein OS=Hordeum vulgare PE=2 SV=2
trembl
ID B9H7P1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s21070g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013818_020 0.0 - - hypothetical protein POPTR_0005s21070g [Populus trichocarpa]
2 Hb_000282_110 0.0214449479 transcription factor TF Family: C2C2-GATA hypothetical protein POPTR_0006s24560g [Populus trichocarpa]
3 Hb_007416_250 0.0245359482 - - -
4 Hb_013405_240 0.0282211863 - - Hydroxyproline-rich glycoprotein family protein [Theobroma cacao]
5 Hb_000762_050 0.0334890877 - - PREDICTED: carbonic anhydrase, chloroplastic-like [Jatropha curcas]
6 Hb_000003_530 0.0417951931 - - PREDICTED: uncharacterized protein LOC105631554 [Jatropha curcas]
7 Hb_003208_010 0.0423174927 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
8 Hb_016334_010 0.0482348947 - - hypothetical protein JCGZ_01311 [Jatropha curcas]
9 Hb_004116_030 0.0499563226 - - Chlorophyll a-b binding CP29.3, chloroplastic -like protein [Gossypium arboreum]
10 Hb_000398_110 0.0530468517 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 4-like [Populus euphratica]
11 Hb_000243_190 0.056596566 transcription factor TF Family: MIKC flowering-related B-class MADS-box protein [Vitis vinifera]
12 Hb_000029_150 0.0576288652 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002161_010 0.0581666514 - - PREDICTED: 3,9-dihydroxypterocarpan 6A-monooxygenase-like [Jatropha curcas]
14 Hb_003251_010 0.0596522528 - - hypothetical protein MIMGU_mgv1a025126mg [Erythranthe guttata]
15 Hb_000977_260 0.06174563 - - hypothetical protein CISIN_1g047084mg, partial [Citrus sinensis]
16 Hb_000083_010 0.0646335106 - - -
17 Hb_008725_280 0.0671336926 transcription factor TF Family: MYB hypothetical protein POPTR_0002s19920g [Populus trichocarpa]
18 Hb_020805_090 0.0703348231 - - glyceraldehyde 3-phosphate dehydrogenase, putative [Ricinus communis]
19 Hb_005736_030 0.075805793 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
20 Hb_027751_070 0.0762427564 transcription factor TF Family: C2C2-CO-like transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_013818_020 Hb_013818_020 Hb_000282_110 Hb_000282_110 Hb_013818_020--Hb_000282_110 Hb_007416_250 Hb_007416_250 Hb_013818_020--Hb_007416_250 Hb_013405_240 Hb_013405_240 Hb_013818_020--Hb_013405_240 Hb_000762_050 Hb_000762_050 Hb_013818_020--Hb_000762_050 Hb_000003_530 Hb_000003_530 Hb_013818_020--Hb_000003_530 Hb_003208_010 Hb_003208_010 Hb_013818_020--Hb_003208_010 Hb_000282_110--Hb_007416_250 Hb_000282_110--Hb_013405_240 Hb_000282_110--Hb_003208_010 Hb_000282_110--Hb_000762_050 Hb_003251_010 Hb_003251_010 Hb_000282_110--Hb_003251_010 Hb_007416_250--Hb_013405_240 Hb_000243_190 Hb_000243_190 Hb_007416_250--Hb_000243_190 Hb_000029_150 Hb_000029_150 Hb_007416_250--Hb_000029_150 Hb_007416_250--Hb_000762_050 Hb_013405_240--Hb_000243_190 Hb_013405_240--Hb_000029_150 Hb_016334_010 Hb_016334_010 Hb_013405_240--Hb_016334_010 Hb_000762_050--Hb_000003_530 Hb_004116_030 Hb_004116_030 Hb_000762_050--Hb_004116_030 Hb_000762_050--Hb_016334_010 Hb_002161_010 Hb_002161_010 Hb_000762_050--Hb_002161_010 Hb_000003_530--Hb_002161_010 Hb_008725_280 Hb_008725_280 Hb_000003_530--Hb_008725_280 Hb_000003_530--Hb_004116_030 Hb_000003_530--Hb_016334_010 Hb_000245_090 Hb_000245_090 Hb_000003_530--Hb_000245_090 Hb_003208_010--Hb_003251_010 Hb_000977_260 Hb_000977_260 Hb_003208_010--Hb_000977_260 Hb_000398_110 Hb_000398_110 Hb_003208_010--Hb_000398_110 Hb_000893_040 Hb_000893_040 Hb_003208_010--Hb_000893_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.57718 0.23477 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 2.81517

CAGE analysis