Hb_004116_030

Information

Type -
Description -
Location Contig4116: 37908-39674
Sequence    

Annotation

kegg
ID rcu:RCOM_0593190
description chlorophyll A/B binding protein, putative
nr
ID KHF99476.1
description Chlorophyll a-b binding CP29.3, chloroplastic -like protein [Gossypium arboreum]
swissprot
ID Q9S7W1
description Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=2 SV=1
trembl
ID A0A0B0MGG1
description Chlorophyll a-b binding CP29.3, chloroplastic-like protein OS=Gossypium arboreum GN=F383_07966 PE=4 SV=1
Gene Ontology
ID GO:0009522
description chlorophyll a-b binding protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40712: 37868-39677
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004116_030 0.0 - - Chlorophyll a-b binding CP29.3, chloroplastic -like protein [Gossypium arboreum]
2 Hb_000762_050 0.0320861883 - - PREDICTED: carbonic anhydrase, chloroplastic-like [Jatropha curcas]
3 Hb_000003_530 0.03408297 - - PREDICTED: uncharacterized protein LOC105631554 [Jatropha curcas]
4 Hb_016334_010 0.0413687377 - - hypothetical protein JCGZ_01311 [Jatropha curcas]
5 Hb_002161_010 0.0420582063 - - PREDICTED: 3,9-dihydroxypterocarpan 6A-monooxygenase-like [Jatropha curcas]
6 Hb_008725_280 0.0434637652 transcription factor TF Family: MYB hypothetical protein POPTR_0002s19920g [Populus trichocarpa]
7 Hb_003653_030 0.0459410391 - - nucleic acid binding protein, putative [Ricinus communis]
8 Hb_013818_020 0.0499563226 - - hypothetical protein POPTR_0005s21070g [Populus trichocarpa]
9 Hb_000245_090 0.0505632714 - - PREDICTED: uncharacterized protein LOC105631554 [Jatropha curcas]
10 Hb_032631_060 0.0515963139 - - Myosin heavy chain, putative [Ricinus communis]
11 Hb_001038_020 0.0524889238 - - hypothetical protein JCGZ_19971 [Jatropha curcas]
12 Hb_001104_080 0.057244612 - - peroxiredoxin, putative [Ricinus communis]
13 Hb_007416_250 0.0626590647 - - -
14 Hb_000282_110 0.0629491673 transcription factor TF Family: C2C2-GATA hypothetical protein POPTR_0006s24560g [Populus trichocarpa]
15 Hb_013405_240 0.0642008514 - - Hydroxyproline-rich glycoprotein family protein [Theobroma cacao]
16 Hb_000825_010 0.0646144937 - - PREDICTED: trans-cinnamate 4-monooxygenase [Jatropha curcas]
17 Hb_000029_150 0.0655468156 - - conserved hypothetical protein [Ricinus communis]
18 Hb_132840_050 0.0677127678 - - PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Jatropha curcas]
19 Hb_004611_010 0.0684435059 - - Blue copper protein precursor, putative [Ricinus communis]
20 Hb_009663_030 0.0695667934 - - Blue copper protein precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_004116_030 Hb_004116_030 Hb_000762_050 Hb_000762_050 Hb_004116_030--Hb_000762_050 Hb_000003_530 Hb_000003_530 Hb_004116_030--Hb_000003_530 Hb_016334_010 Hb_016334_010 Hb_004116_030--Hb_016334_010 Hb_002161_010 Hb_002161_010 Hb_004116_030--Hb_002161_010 Hb_008725_280 Hb_008725_280 Hb_004116_030--Hb_008725_280 Hb_003653_030 Hb_003653_030 Hb_004116_030--Hb_003653_030 Hb_000762_050--Hb_000003_530 Hb_013818_020 Hb_013818_020 Hb_000762_050--Hb_013818_020 Hb_000762_050--Hb_016334_010 Hb_000762_050--Hb_002161_010 Hb_000282_110 Hb_000282_110 Hb_000762_050--Hb_000282_110 Hb_000003_530--Hb_002161_010 Hb_000003_530--Hb_008725_280 Hb_000003_530--Hb_016334_010 Hb_000245_090 Hb_000245_090 Hb_000003_530--Hb_000245_090 Hb_132840_050 Hb_132840_050 Hb_016334_010--Hb_132840_050 Hb_000243_190 Hb_000243_190 Hb_016334_010--Hb_000243_190 Hb_016334_010--Hb_008725_280 Hb_002161_010--Hb_008725_280 Hb_002161_010--Hb_000245_090 Hb_004611_010 Hb_004611_010 Hb_002161_010--Hb_004611_010 Hb_001038_020 Hb_001038_020 Hb_002161_010--Hb_001038_020 Hb_008725_280--Hb_000245_090 Hb_008725_280--Hb_004611_010 Hb_008725_280--Hb_001038_020 Hb_032631_060 Hb_032631_060 Hb_003653_030--Hb_032631_060 Hb_003653_030--Hb_000762_050 Hb_003653_030--Hb_001038_020 Hb_001104_080 Hb_001104_080 Hb_003653_030--Hb_001104_080 Hb_003653_030--Hb_000003_530
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.705493 90.0161 25.314 0.0879353 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0537559 0.0845537 0 0 356.38

CAGE analysis