Hb_002161_010

Information

Type -
Description -
Location Contig2161: 17776-19788
Sequence    

Annotation

kegg
ID pop:POPTR_0006s05710g
description cytochrome P450 family protein
nr
ID XP_012087798.1
description PREDICTED: 3,9-dihydroxypterocarpan 6A-monooxygenase-like [Jatropha curcas]
swissprot
ID Q42798
description 3,9-dihydroxypterocarpan 6A-monooxygenase OS=Glycine max GN=CYP93A1 PE=1 SV=1
trembl
ID A0A067JP22
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25504 PE=3 SV=1
Gene Ontology
ID GO:0005506
description cytochrome p450 93a3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22359: 17605-19719
cDNA
(Sanger)
(ID:Location)		 014_I04.ab1: 17786-18515 , 035_B08.ab1: 17792-18557 , 044_B11.ab1: 17792-18640 , 051_O06.ab1: 17792-18488

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002161_010 0.0 - - PREDICTED: 3,9-dihydroxypterocarpan 6A-monooxygenase-like [Jatropha curcas]
2 Hb_008725_280 0.0170026733 transcription factor TF Family: MYB hypothetical protein POPTR_0002s19920g [Populus trichocarpa]
3 Hb_000003_530 0.0172614332 - - PREDICTED: uncharacterized protein LOC105631554 [Jatropha curcas]
4 Hb_000245_090 0.0339957217 - - PREDICTED: uncharacterized protein LOC105631554 [Jatropha curcas]
5 Hb_000762_050 0.0385337814 - - PREDICTED: carbonic anhydrase, chloroplastic-like [Jatropha curcas]
6 Hb_004611_010 0.0405803443 - - Blue copper protein precursor, putative [Ricinus communis]
7 Hb_001038_020 0.0412312961 - - hypothetical protein JCGZ_19971 [Jatropha curcas]
8 Hb_004116_030 0.0420582063 - - Chlorophyll a-b binding CP29.3, chloroplastic -like protein [Gossypium arboreum]
9 Hb_016334_010 0.0525905466 - - hypothetical protein JCGZ_01311 [Jatropha curcas]
10 Hb_013818_020 0.0581666514 - - hypothetical protein POPTR_0005s21070g [Populus trichocarpa]
11 Hb_000083_010 0.0620279056 - - -
12 Hb_001038_040 0.0638310676 - - -
13 Hb_003436_040 0.0659508018 - - monovalent cation:proton antiporter, putative [Ricinus communis]
14 Hb_009663_030 0.0665360754 - - Blue copper protein precursor, putative [Ricinus communis]
15 Hb_027403_010 0.0680968179 - - P66 protein [Hevea brasiliensis]
16 Hb_003653_030 0.0686329086 - - nucleic acid binding protein, putative [Ricinus communis]
17 Hb_027751_070 0.0701051421 transcription factor TF Family: C2C2-CO-like transcription factor, putative [Ricinus communis]
18 Hb_007559_020 0.0706860372 - - peptidylprolyl isomerase, putative [Ricinus communis]
19 Hb_032631_060 0.0724327933 - - Myosin heavy chain, putative [Ricinus communis]
20 Hb_000398_110 0.0728730779 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 4-like [Populus euphratica]

Gene co-expression network

sample Hb_002161_010 Hb_002161_010 Hb_008725_280 Hb_008725_280 Hb_002161_010--Hb_008725_280 Hb_000003_530 Hb_000003_530 Hb_002161_010--Hb_000003_530 Hb_000245_090 Hb_000245_090 Hb_002161_010--Hb_000245_090 Hb_000762_050 Hb_000762_050 Hb_002161_010--Hb_000762_050 Hb_004611_010 Hb_004611_010 Hb_002161_010--Hb_004611_010 Hb_001038_020 Hb_001038_020 Hb_002161_010--Hb_001038_020 Hb_008725_280--Hb_000003_530 Hb_008725_280--Hb_000245_090 Hb_008725_280--Hb_004611_010 Hb_008725_280--Hb_001038_020 Hb_004116_030 Hb_004116_030 Hb_008725_280--Hb_004116_030 Hb_000003_530--Hb_000762_050 Hb_000003_530--Hb_004116_030 Hb_016334_010 Hb_016334_010 Hb_000003_530--Hb_016334_010 Hb_000003_530--Hb_000245_090 Hb_000245_090--Hb_004611_010 Hb_000245_090--Hb_001038_020 Hb_000245_090--Hb_004116_030 Hb_000762_050--Hb_004116_030 Hb_013818_020 Hb_013818_020 Hb_000762_050--Hb_013818_020 Hb_000762_050--Hb_016334_010 Hb_000282_110 Hb_000282_110 Hb_000762_050--Hb_000282_110 Hb_027403_010 Hb_027403_010 Hb_004611_010--Hb_027403_010 Hb_003436_040 Hb_003436_040 Hb_004611_010--Hb_003436_040 Hb_004611_010--Hb_001038_020 Hb_001038_020--Hb_000003_530 Hb_001038_020--Hb_000762_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 6.65377 1.36953 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 26.403

CAGE analysis