Hb_027403_010

Information

Type -
Description -
Location Contig27403: 9018-12133
Sequence    

Annotation

kegg
ID pop:POPTR_0005s06090g
description hypothetical protein
nr
ID AAO49267.1
description P66 protein [Hevea brasiliensis]
swissprot
ID Q5Z9Z0
description Beta-glucosidase 24 OS=Oryza sativa subsp. japonica GN=BGLU24 PE=2 SV=1
trembl
ID Q84L69
description P66 protein OS=Hevea brasiliensis GN=P66 PE=2 SV=1
Gene Ontology
ID GO:0043231
description beta-glucosidase 12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28710: 9020-10251 , PASA_asmbl_28711: 10543-12250
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027403_010 0.0 - - P66 protein [Hevea brasiliensis]
2 Hb_000139_010 0.0251322576 - - -
3 Hb_097940_010 0.0282060188 - - pollen protein Ole E I-like protein [Medicago truncatula]
4 Hb_007559_020 0.0308592824 - - peptidylprolyl isomerase, putative [Ricinus communis]
5 Hb_001279_380 0.0350584861 - - PREDICTED: uncharacterized protein LOC105115824 isoform X1 [Populus euphratica]
6 Hb_004611_010 0.03529574 - - Blue copper protein precursor, putative [Ricinus communis]
7 Hb_008566_060 0.0398553864 - - conserved hypothetical protein [Ricinus communis]
8 Hb_185830_050 0.0502175941 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 2 [Jatropha curcas]
9 Hb_008725_280 0.0527195771 transcription factor TF Family: MYB hypothetical protein POPTR_0002s19920g [Populus trichocarpa]
10 Hb_000245_090 0.0565203767 - - PREDICTED: uncharacterized protein LOC105631554 [Jatropha curcas]
11 Hb_003337_080 0.0605418187 - - PREDICTED: probable esterase KAI2 [Jatropha curcas]
12 Hb_003436_040 0.0624368988 - - monovalent cation:proton antiporter, putative [Ricinus communis]
13 Hb_002893_200 0.0659327544 - - aldehyde dehydrogenase, putative [Ricinus communis]
14 Hb_000640_090 0.0661085108 - - PREDICTED: calvin cycle protein CP12-2, chloroplastic-like [Jatropha curcas]
15 Hb_001038_020 0.0666134461 - - hypothetical protein JCGZ_19971 [Jatropha curcas]
16 Hb_002161_010 0.0680968179 - - PREDICTED: 3,9-dihydroxypterocarpan 6A-monooxygenase-like [Jatropha curcas]
17 Hb_001104_080 0.0684541491 - - peroxiredoxin, putative [Ricinus communis]
18 Hb_000825_010 0.0711983263 - - PREDICTED: trans-cinnamate 4-monooxygenase [Jatropha curcas]
19 Hb_000805_080 0.0725715598 - - PREDICTED: abscisic acid 8'-hydroxylase 2 isoform X2 [Jatropha curcas]
20 Hb_009663_030 0.0748334496 - - Blue copper protein precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_027403_010 Hb_027403_010 Hb_000139_010 Hb_000139_010 Hb_027403_010--Hb_000139_010 Hb_097940_010 Hb_097940_010 Hb_027403_010--Hb_097940_010 Hb_007559_020 Hb_007559_020 Hb_027403_010--Hb_007559_020 Hb_001279_380 Hb_001279_380 Hb_027403_010--Hb_001279_380 Hb_004611_010 Hb_004611_010 Hb_027403_010--Hb_004611_010 Hb_008566_060 Hb_008566_060 Hb_027403_010--Hb_008566_060 Hb_000139_010--Hb_097940_010 Hb_000139_010--Hb_001279_380 Hb_000139_010--Hb_007559_020 Hb_000139_010--Hb_008566_060 Hb_002893_200 Hb_002893_200 Hb_000139_010--Hb_002893_200 Hb_097940_010--Hb_007559_020 Hb_097940_010--Hb_001279_380 Hb_097940_010--Hb_008566_060 Hb_097940_010--Hb_002893_200 Hb_007559_020--Hb_001279_380 Hb_000825_010 Hb_000825_010 Hb_007559_020--Hb_000825_010 Hb_007559_020--Hb_008566_060 Hb_001279_380--Hb_008566_060 Hb_001279_380--Hb_002893_200 Hb_008725_280 Hb_008725_280 Hb_004611_010--Hb_008725_280 Hb_000245_090 Hb_000245_090 Hb_004611_010--Hb_000245_090 Hb_002161_010 Hb_002161_010 Hb_004611_010--Hb_002161_010 Hb_003436_040 Hb_003436_040 Hb_004611_010--Hb_003436_040 Hb_001038_020 Hb_001038_020 Hb_004611_010--Hb_001038_020 Hb_185830_050 Hb_185830_050 Hb_008566_060--Hb_185830_050 Hb_008566_060--Hb_002893_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00995498 31.2314 4.02898 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 85.0352

CAGE analysis