Hb_001279_380

Information

Type -
Description -
Location Contig1279: 381341-382390
Sequence    

Annotation

kegg
ID atr:s00166p00028420
description AMTR_s00166p00028420; hypothetical protein
nr
ID XP_011011156.1
description PREDICTED: uncharacterized protein LOC105115824 isoform X1 [Populus euphratica]
swissprot
ID -
description -
trembl
ID W1PRP1
description Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00166p00028420 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001279_380 0.0 - - PREDICTED: uncharacterized protein LOC105115824 isoform X1 [Populus euphratica]
2 Hb_000139_010 0.0124180835 - - -
3 Hb_097940_010 0.0189044966 - - pollen protein Ole E I-like protein [Medicago truncatula]
4 Hb_007559_020 0.0293064272 - - peptidylprolyl isomerase, putative [Ricinus communis]
5 Hb_008566_060 0.0327708892 - - conserved hypothetical protein [Ricinus communis]
6 Hb_027403_010 0.0350584861 - - P66 protein [Hevea brasiliensis]
7 Hb_002893_200 0.041078484 - - aldehyde dehydrogenase, putative [Ricinus communis]
8 Hb_002014_140 0.0411322099 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
9 Hb_185830_050 0.0490505267 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 2 [Jatropha curcas]
10 Hb_000640_090 0.0498048934 - - PREDICTED: calvin cycle protein CP12-2, chloroplastic-like [Jatropha curcas]
11 Hb_006901_010 0.0531154263 - - hypothetical protein JCGZ_20722 [Jatropha curcas]
12 Hb_005605_020 0.0648657619 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
13 Hb_003337_080 0.0658660985 - - PREDICTED: probable esterase KAI2 [Jatropha curcas]
14 Hb_107748_010 0.0671002308 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like isoform X2 [Jatropha curcas]
15 Hb_000825_010 0.0675300916 - - PREDICTED: trans-cinnamate 4-monooxygenase [Jatropha curcas]
16 Hb_004611_010 0.0684750932 - - Blue copper protein precursor, putative [Ricinus communis]
17 Hb_001104_080 0.0716802503 - - peroxiredoxin, putative [Ricinus communis]
18 Hb_000083_020 0.0725694939 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
19 Hb_000805_080 0.0741900106 - - PREDICTED: abscisic acid 8'-hydroxylase 2 isoform X2 [Jatropha curcas]
20 Hb_008725_280 0.0788135034 transcription factor TF Family: MYB hypothetical protein POPTR_0002s19920g [Populus trichocarpa]

Gene co-expression network

sample Hb_001279_380 Hb_001279_380 Hb_000139_010 Hb_000139_010 Hb_001279_380--Hb_000139_010 Hb_097940_010 Hb_097940_010 Hb_001279_380--Hb_097940_010 Hb_007559_020 Hb_007559_020 Hb_001279_380--Hb_007559_020 Hb_008566_060 Hb_008566_060 Hb_001279_380--Hb_008566_060 Hb_027403_010 Hb_027403_010 Hb_001279_380--Hb_027403_010 Hb_002893_200 Hb_002893_200 Hb_001279_380--Hb_002893_200 Hb_000139_010--Hb_097940_010 Hb_000139_010--Hb_007559_020 Hb_000139_010--Hb_027403_010 Hb_000139_010--Hb_008566_060 Hb_000139_010--Hb_002893_200 Hb_097940_010--Hb_007559_020 Hb_097940_010--Hb_027403_010 Hb_097940_010--Hb_008566_060 Hb_097940_010--Hb_002893_200 Hb_007559_020--Hb_027403_010 Hb_000825_010 Hb_000825_010 Hb_007559_020--Hb_000825_010 Hb_007559_020--Hb_008566_060 Hb_185830_050 Hb_185830_050 Hb_008566_060--Hb_185830_050 Hb_008566_060--Hb_027403_010 Hb_008566_060--Hb_002893_200 Hb_004611_010 Hb_004611_010 Hb_027403_010--Hb_004611_010 Hb_002014_140 Hb_002014_140 Hb_002893_200--Hb_002014_140 Hb_000640_090 Hb_000640_090 Hb_002893_200--Hb_000640_090 Hb_107748_010 Hb_107748_010 Hb_002893_200--Hb_107748_010 Hb_006901_010 Hb_006901_010 Hb_002893_200--Hb_006901_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.167479 0.0240769 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.389665

CAGE analysis