Hb_002014_140

Information

Type transcription factor
Description TF Family: M-type
Location Contig2014: 134371-141279
Sequence    

Annotation

kegg
ID rcu:RCOM_1052790
description mads box protein, putative
nr
ID XP_002514306.1
description mads box protein, putative [Ricinus communis]
swissprot
ID Q9ATE5
description MADS-box protein FBP24 OS=Petunia hybrida GN=FBP24 PE=1 SV=1
trembl
ID B9RKR2
description Mads box protein, putative OS=Ricinus communis GN=RCOM_1052790 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20468: 140515-140869
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002014_140 0.0 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
2 Hb_006901_010 0.0176389756 - - hypothetical protein JCGZ_20722 [Jatropha curcas]
3 Hb_002893_200 0.038487835 - - aldehyde dehydrogenase, putative [Ricinus communis]
4 Hb_001279_380 0.0411322099 - - PREDICTED: uncharacterized protein LOC105115824 isoform X1 [Populus euphratica]
5 Hb_000334_290 0.0509303781 - - monovalent cation:proton antiporter, putative [Ricinus communis]
6 Hb_000139_010 0.052780936 - - -
7 Hb_000482_170 0.053228059 transcription factor TF Family: C2C2-GATA GATA nirate-inducible carbon-metabolism involved protein [Populus nigra x Populus x canadensis]
8 Hb_000083_020 0.054343853 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
9 Hb_000640_090 0.0552563561 - - PREDICTED: calvin cycle protein CP12-2, chloroplastic-like [Jatropha curcas]
10 Hb_097940_010 0.0557433276 - - pollen protein Ole E I-like protein [Medicago truncatula]
11 Hb_008566_060 0.0571496429 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005605_010 0.0602459305 - - hypothetical protein POPTR_0019s13220g [Populus trichocarpa]
13 Hb_082402_020 0.0606314136 - - PREDICTED: aluminum-activated malate transporter 8-like [Jatropha curcas]
14 Hb_002890_170 0.0633545239 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 4-like [Populus euphratica]
15 Hb_007559_020 0.0639457811 - - peptidylprolyl isomerase, putative [Ricinus communis]
16 Hb_107748_010 0.0649183472 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like isoform X2 [Jatropha curcas]
17 Hb_004525_010 0.0660088248 - - late embryogenesis abundant, putative [Ricinus communis]
18 Hb_185830_050 0.0697367649 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 2 [Jatropha curcas]
19 Hb_000985_150 0.0718713404 - - PREDICTED: subtilisin-like protease SBT5.3 [Jatropha curcas]
20 Hb_005605_020 0.0723473272 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]

Gene co-expression network

sample Hb_002014_140 Hb_002014_140 Hb_006901_010 Hb_006901_010 Hb_002014_140--Hb_006901_010 Hb_002893_200 Hb_002893_200 Hb_002014_140--Hb_002893_200 Hb_001279_380 Hb_001279_380 Hb_002014_140--Hb_001279_380 Hb_000334_290 Hb_000334_290 Hb_002014_140--Hb_000334_290 Hb_000139_010 Hb_000139_010 Hb_002014_140--Hb_000139_010 Hb_000482_170 Hb_000482_170 Hb_002014_140--Hb_000482_170 Hb_006901_010--Hb_000482_170 Hb_000083_020 Hb_000083_020 Hb_006901_010--Hb_000083_020 Hb_006901_010--Hb_002893_200 Hb_005605_010 Hb_005605_010 Hb_006901_010--Hb_005605_010 Hb_006901_010--Hb_000334_290 Hb_002893_200--Hb_001279_380 Hb_008566_060 Hb_008566_060 Hb_002893_200--Hb_008566_060 Hb_000640_090 Hb_000640_090 Hb_002893_200--Hb_000640_090 Hb_107748_010 Hb_107748_010 Hb_002893_200--Hb_107748_010 Hb_001279_380--Hb_000139_010 Hb_097940_010 Hb_097940_010 Hb_001279_380--Hb_097940_010 Hb_007559_020 Hb_007559_020 Hb_001279_380--Hb_007559_020 Hb_001279_380--Hb_008566_060 Hb_027403_010 Hb_027403_010 Hb_001279_380--Hb_027403_010 Hb_000985_150 Hb_000985_150 Hb_000334_290--Hb_000985_150 Hb_000334_290--Hb_002893_200 Hb_004525_010 Hb_004525_010 Hb_000334_290--Hb_004525_010 Hb_082402_020 Hb_082402_020 Hb_000334_290--Hb_082402_020 Hb_000139_010--Hb_097940_010 Hb_000139_010--Hb_007559_020 Hb_000139_010--Hb_027403_010 Hb_000139_010--Hb_008566_060 Hb_000139_010--Hb_002893_200 Hb_000482_170--Hb_005605_010 Hb_000482_170--Hb_000083_020 Hb_005245_110 Hb_005245_110 Hb_000482_170--Hb_005245_110 Hb_001823_010 Hb_001823_010 Hb_000482_170--Hb_001823_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.355288 0.0545093 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.681764

CAGE analysis