Hb_000334_290

Information

Type -
Description -
Location Contig334: 256029-258813
Sequence    

Annotation

kegg
ID rcu:RCOM_0493350
description monovalent cation:proton antiporter, putative
nr
ID XP_002532167.1
description monovalent cation:proton antiporter, putative [Ricinus communis]
swissprot
ID Q9SAK8
description Cation/H(+) antiporter 2 OS=Arabidopsis thaliana GN=CHX2 PE=2 SV=1
trembl
ID B9T1P8
description Monovalent cation:proton antiporter, putative OS=Ricinus communis GN=RCOM_0493350 PE=4 SV=1
Gene Ontology
ID GO:0016021
description cation h(+) antiporter 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35054: 256872-257650 , PASA_asmbl_35055: 258244-258656
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000334_290 0.0 - - monovalent cation:proton antiporter, putative [Ricinus communis]
2 Hb_000985_150 0.0422546247 - - PREDICTED: subtilisin-like protease SBT5.3 [Jatropha curcas]
3 Hb_002014_140 0.0509303781 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
4 Hb_006901_010 0.052676518 - - hypothetical protein JCGZ_20722 [Jatropha curcas]
5 Hb_002893_200 0.0533332807 - - aldehyde dehydrogenase, putative [Ricinus communis]
6 Hb_004525_010 0.0569858337 - - late embryogenesis abundant, putative [Ricinus communis]
7 Hb_082402_020 0.0574136544 - - PREDICTED: aluminum-activated malate transporter 8-like [Jatropha curcas]
8 Hb_000948_240 0.0582401628 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000482_170 0.0632939266 transcription factor TF Family: C2C2-GATA GATA nirate-inducible carbon-metabolism involved protein [Populus nigra x Populus x canadensis]
10 Hb_002890_170 0.0640892535 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 4-like [Populus euphratica]
11 Hb_107748_010 0.0673262821 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like isoform X2 [Jatropha curcas]
12 Hb_005375_090 0.069216933 - - PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Jatropha curcas]
13 Hb_001862_040 0.0703537095 - - heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis]
14 Hb_001006_160 0.0749112565 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
15 Hb_003747_090 0.0750849531 - - PREDICTED: glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic isoform X2 [Jatropha curcas]
16 Hb_005605_010 0.0764119287 - - hypothetical protein POPTR_0019s13220g [Populus trichocarpa]
17 Hb_002592_040 0.0773807843 - - ACC oxidase 3 [Hevea brasiliensis]
18 Hb_000640_090 0.0785834377 - - PREDICTED: calvin cycle protein CP12-2, chloroplastic-like [Jatropha curcas]
19 Hb_000083_020 0.0803747563 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
20 Hb_004837_230 0.08064277 - - unknown [Populus trichocarpa]

Gene co-expression network

sample Hb_000334_290 Hb_000334_290 Hb_000985_150 Hb_000985_150 Hb_000334_290--Hb_000985_150 Hb_002014_140 Hb_002014_140 Hb_000334_290--Hb_002014_140 Hb_006901_010 Hb_006901_010 Hb_000334_290--Hb_006901_010 Hb_002893_200 Hb_002893_200 Hb_000334_290--Hb_002893_200 Hb_004525_010 Hb_004525_010 Hb_000334_290--Hb_004525_010 Hb_082402_020 Hb_082402_020 Hb_000334_290--Hb_082402_020 Hb_000482_170 Hb_000482_170 Hb_000985_150--Hb_000482_170 Hb_008484_080 Hb_008484_080 Hb_000985_150--Hb_008484_080 Hb_000985_150--Hb_004525_010 Hb_000948_240 Hb_000948_240 Hb_000985_150--Hb_000948_240 Hb_000985_150--Hb_006901_010 Hb_002014_140--Hb_006901_010 Hb_002014_140--Hb_002893_200 Hb_001279_380 Hb_001279_380 Hb_002014_140--Hb_001279_380 Hb_000139_010 Hb_000139_010 Hb_002014_140--Hb_000139_010 Hb_002014_140--Hb_000482_170 Hb_006901_010--Hb_000482_170 Hb_000083_020 Hb_000083_020 Hb_006901_010--Hb_000083_020 Hb_006901_010--Hb_002893_200 Hb_005605_010 Hb_005605_010 Hb_006901_010--Hb_005605_010 Hb_002893_200--Hb_001279_380 Hb_008566_060 Hb_008566_060 Hb_002893_200--Hb_008566_060 Hb_000640_090 Hb_000640_090 Hb_002893_200--Hb_000640_090 Hb_107748_010 Hb_107748_010 Hb_002893_200--Hb_107748_010 Hb_004525_010--Hb_002893_200 Hb_004837_230 Hb_004837_230 Hb_004525_010--Hb_004837_230 Hb_004525_010--Hb_107748_010 Hb_004525_010--Hb_006901_010 Hb_002890_170 Hb_002890_170 Hb_082402_020--Hb_002890_170 Hb_001862_040 Hb_001862_040 Hb_082402_020--Hb_001862_040 Hb_002400_200 Hb_002400_200 Hb_082402_020--Hb_002400_200 Hb_003747_090 Hb_003747_090 Hb_082402_020--Hb_003747_090 Hb_005375_090 Hb_005375_090 Hb_082402_020--Hb_005375_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 3.56576 0.665793 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0181572 0.0142876 0 0 6.19189

CAGE analysis